RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 TREX1Q9NSU2 369 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 CUTCQ9NTM9 273 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 ABCF3Q9NUQ8 709 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 SYBUQ9NX95 663 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 P4HTMQ9NXG6 502 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 IL1RAPL1Q9NZN1 696 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 SAMD15Q9P1V8 674 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 CDC23Q9UJX2 597 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 RUVBL2Q9Y230 463 aaKnown RBP6.16□□□□□ -1.42
TCF4-228ENST00000565393 MAP4K5Q9Y4K4 846 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 NFS1Q9Y697 457 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 MAU2Q9Y6X3 613 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 ITPR1Q14643 2758 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 WDFY3Q8IZQ1 3526 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 FREM2Q5SZK8 3169 aa6.16□□□□□ -1.42
TCF4-228ENST00000565393 IGSF10Q6WRI0 2623 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 DSPP15924 2871 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 A0A1B0GX78 115 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 TCRBV7S3A2A0A539 114 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 BLACEA4D250 179 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SDR42E2A6NKP2 422 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 H3BMH7 237 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 GOLGA8MH3BSY2 632 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 AGPSO00116 658 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 DSCR3O14972 297 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 NIPSNAP2O75323 286 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SYF2O95926 243 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 ALBP02768 609 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 ERVK-10P10266 1014 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 PKMP14618 531 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 ITGAXP20702 1163 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 RPS3P23396 243 aaKnown RBP eCLIP6.15□□□□□ -1.42
TCF4-228ENST00000565393 ITGA3P26006 1051 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 VARSP26640 1264 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 CMPK1P30085 196 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 RPA3P35244 121 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 BDKRB1P46663 353 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 OR1D4P47884 311 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 CD97P48960 835 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 FOXL2P58012 376 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 OCA2Q04671 838 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 DHX34Q14147 1143 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 FASTKQ14296 549 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 GRB7Q14451 532 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 KLHL38Q2WGJ6 581 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 ANKRD20A4Q4UJ75 823 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 C4orf17Q53FE4 359 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 DCAF10Q5QP82 559 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 RNF187Q5TA31 235 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 PAPD7Q5XG87 772 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 ZNF385CQ66K41 422 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 SLC6A19Q695T7 634 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 FRMPD2BQ6IN97 320 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 MRPL14Q6P1L8 145 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 FBXO42Q6P3S6 717 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 ZNF662Q6ZS27 426 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 MRGPREQ86SM8 312 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 PARP9Q8IXQ6 854 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 PRSS58Q8IYP2 241 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 GALNT16Q8N428 558 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 METTL27Q8N6F8 245 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 RBMXL3Q8N7X1 1067 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 PRELID2Q8N945 189 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 OR9A1PQ8NGU1 263 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 TM9SF4Q92544 642 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 MS4A14Q96JA4 679 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 VPS50Q96JG6 964 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 BIRC8Q96P09 236 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SMAD5Q99717 465 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 RAB11FIP5Q9BXF6 653 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 ILKAPQ9H0C8 392 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 CCDC68Q9H2F9 335 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SOX17Q9H6I2 414 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 ZNF304Q9HCX3 659 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SLC22A11Q9NSA0 550 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 UTP6Q9NYH9 597 aaKnown RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 C5AR2Q9P296 337 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 STOX2Q9P2F5 926 aaPredicted RBP6.15□□□□□ -1.42
TCF4-228ENST00000565393 GALPQ9UBC7 116 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SOX13Q9UN79 622 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 PPP2R2CQ9Y2T4 447 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 MAD1L1Q9Y6D9 718 aa6.15□□□□□ -1.42
TCF4-228ENST00000565393 SDK2Q58EX2 2172 aa6.15□□□□□ -1.43
TCF4-228ENST00000565393 PTPRQQ9UMZ3 2332 aa6.15□□□□□ -1.43
TCF4-228ENST00000565393 SCN8AQ9UQD0 1980 aa6.15□□□□□ -1.43
TCF4-228ENST00000565393 LOC105369274A0A096LPK9 316 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 LOC102723532A0A0G2JNH3 316 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 KRT87PA6NCN2 255 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 ZNF839A8K0R7 811 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 TCP11X1B4DZS4 312 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 ZBTB14O43829 449 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 PRICKLE3O43900 615 aaPredicted RBP6.14□□□□□ -1.43
TCF4-228ENST00000565393 CTSVO60911 334 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 CNOT3O75175 753 aaKnown RBP6.14□□□□□ -1.43
TCF4-228ENST00000565393 USP1O94782 785 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 IPO13O94829 963 aaKnown RBP6.14□□□□□ -1.43
TCF4-228ENST00000565393 FKBP9O95302 570 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 MATN4O95460 622 aa6.14□□□□□ -1.43
TCF4-228ENST00000565393 ESR1P03372 595 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms