RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TMED2Q15363 201 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 EIF2S3LQ2VIR3 472 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 ZC3H12BQ5HYM0 836 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 TTLL10Q6ZVT0 673 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 LDB1Q86U70 411 aaPredicted RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 IQCKQ8N0W5 287 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 KRT222Q8N1A0 295 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 MPP5Q8N3R9 675 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 C2orf73Q8N5S3 287 aaPredicted RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 CFAP61Q8NHU2 1237 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 SNRNP40Q96DI7 357 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 BARD1Q99728 777 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 ATP13A2Q9NQ11 1180 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 EIF2B3Q9NR50 452 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 INTS7Q9NVH2 962 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 CIDEBQ9UHD4 219 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 ANAPC5Q9UJX4 755 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 ANKRD12Q6UB98 2062 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 CCDC88CQ9P219 2028 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 FITM1A5D6W6 292 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 TARM1B6A8C7 271 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 MASP2O00187 686 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 DSCR3O14972 297 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 KRT86O43790 486 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 CBX6O95503 412 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 DDAH2O95865 285 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 PIM1P11309 404 aaPredicted RBP16.42■□□□□ 0.22
CLN3-216ENST00000565316 RPS3P23396 243 aaKnown RBP eCLIP16.42■□□□□ 0.224e-6■■□□□ 12.9
CLN3-216ENST00000565316 MMP11P24347 488 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 CDC25BP30305 580 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 SNX1Q13596 522 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 SIX1Q15475 284 aaPredicted RBP16.42■□□□□ 0.22
CLN3-216ENST00000565316 SF1Q15637 639 aaKnown RBP16.42■□□□□ 0.22
CLN3-216ENST00000565316 CYP2A13Q16696 494 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 TCTE1Q5JU00 501 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 DRICH1Q6PGQ1 229 aaPredicted RBP16.42■□□□□ 0.22
CLN3-216ENST00000565316 Q6ZS92 163 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 COX15Q7KZN9 410 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 LRRC6Q86X45 466 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 GAS2L3Q86XJ1 694 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 CCDC89Q8N998 374 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 HMGCLL1Q8TB92 370 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 INPP5DQ92835 1189 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 ZUFSPQ96AP4 578 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 RAB11FIP5Q9BXF6 653 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 CUTCQ9NTM9 273 aa16.42■□□□□ 0.22
CLN3-216ENST00000565316 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.42■□□□□ 0.22
CLN3-216ENST00000565316 DRG1Q9Y295 367 aaKnown RBP16.42■□□□□ 0.22
CLN3-216ENST00000565316 WIPF3A6NGB9 483 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 KPNA5O15131 536 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 C1orf105O95561 183 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 ZSCAN5DPP0CG00 497 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 ATXN8OSP0DMR3 200 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 GRIA3P42263 894 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 AIMP2Q13155 320 aaKnown RBP16.41■□□□□ 0.22
CLN3-216ENST00000565316 GRM7Q14831 915 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 CCNG2Q16589 344 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 NKG7Q16617 165 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 PTRHD1Q6GMV3 140 aaKnown RBP16.41■□□□□ 0.22
CLN3-216ENST00000565316 TAX1BP1Q86VP1 789 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 CISD2Q8N5K1 135 aaKnown RBP16.41■□□□□ 0.22
CLN3-216ENST00000565316 TM9SF4Q92544 642 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 RAD51AP1Q96B01 352 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 PANX3Q96QZ0 392 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 SPSB2Q99619 263 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 TSGA10Q9BZW7 698 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 IL22Q9GZX6 179 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 ZBTB20Q9HC78 741 aaPredicted RBP16.41■□□□□ 0.22
CLN3-216ENST00000565316 ASF1BQ9NVP2 202 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 GNPTGQ9UJJ9 305 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 FBXL4Q9UKA2 621 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 SLC39A10Q9ULF5 831 aa16.41■□□□□ 0.22
CLN3-216ENST00000565316 SOCS6O14544 535 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 SRPX2O60687 465 aaPredicted RBP16.4■□□□□ 0.22
CLN3-216ENST00000565316 CTSVO60911 334 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 MCM3P25205 808 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 NPY2RP49146 381 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 SESN2P58004 480 aaPredicted RBP16.4■□□□□ 0.22
CLN3-216ENST00000565316 CRADDP78560 199 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 NR6A1Q15406 480 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 MEI1Q5TIA1 1274 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 HIST2H2BCQ6DN03 193 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 TTC23LQ6PF05 361 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 C4orf22Q6V702 233 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 ZADH2Q8N4Q0 377 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 SELENOSQ9BQE4 189 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 MRM3Q9HC36 420 aaKnown RBP16.4■□□□□ 0.22
CLN3-216ENST00000565316 SLC6A20Q9NP91 592 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 IL1RAPL1Q9NZN1 696 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 MAP10Q9P2G4 905 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 NXT1Q9UKK6 140 aaKnown RBP16.4■□□□□ 0.22
CLN3-216ENST00000565316 TTC7AQ9ULT0 858 aaPredicted RBP16.4■□□□□ 0.22
CLN3-216ENST00000565316 GUCA1BQ9UMX6 200 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 PCDHGA10Q9Y5H3 936 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 MRFAP1Q9Y605 127 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 CELSR2Q9HCU4 2923 aa16.4■□□□□ 0.22
CLN3-216ENST00000565316 PCM1Q15154 2024 aa16.39■□□□□ 0.22
CLN3-216ENST00000565316 POLEQ07864 2286 aa16.39■□□□□ 0.22
CLN3-216ENST00000565316 MYO9AB2RTY4 2548 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 VSTM2BA6NLU5 285 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms