RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PDLIM5Q96HC4 596 aaKnown RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 SYT17Q9BSW7 474 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 TNKS2Q9H2K2 1166 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 EPS8L2Q9H6S3 715 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 ABCB10Q9NRK6 738 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 TPRKBQ9Y3C4 175 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 N6AMT1Q9Y5N5 214 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 SCN10AQ9Y5Y9 1956 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 FAM220BPB1ANY3 271 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 PDYNP01213 254 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 EPB42P16452 691 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 MAGP20916 626 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 GKP32189 559 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ATP5C1P36542 298 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 RGS4P49798 205 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ST13P50502 369 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 HUNKP57058 714 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 RPS14P62263 151 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 FAM189BP81408 668 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ACOX1Q15067 660 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 HIST2H2ACQ16777 129 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 ATG9BQ674R7 924 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ZCCHC8Q6NZY4 707 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 SHQ1Q6PI26 577 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 PLEKHG7Q6ZR37 379 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 CALHM3Q86XJ0 350 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 STK40Q8N2I9 435 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 RNF175Q8N4F7 328 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 TTC29Q8NA56 475 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 WBP2Q969T9 261 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 REXO5Q96IC2 774 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 ZNF641Q96N77 438 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 BTBD2Q9BX70 525 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 DUSP21Q9H596 190 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 MAGEE1Q9HCI5 957 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 SCN3BQ9NY72 215 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 VPS51Q9UID3 782 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 SLCO3A1Q9UIG8 710 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.87□□□□□ -0.35
CLN3-210ENST00000563874 PPT2Q9UMR5 302 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 TSC22D4Q9Y3Q8 395 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 FAM32AQ9Y421 112 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 OARD1Q9Y530 152 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 GSTT2P0CG29 244 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 GSTT2BP0CG30 244 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ITGAMP11215 1152 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ZNF7P17097 686 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 SERPINB10P48595 397 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 VLDLRP98155 873 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 IRF5Q13568 498 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 RFX4Q33E94 735 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 OR4F3Q6IEY1 312 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 OR2T5Q6IEZ7 315 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 PLD3Q8IV08 490 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ADGRG2Q8IZP9 1017 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 TMEM132CQ8N3T6 1108 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 SETD9Q8NE22 299 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 OR2T29Q8NH02 315 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 FBLIM1Q8WUP2 373 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 LGALS12Q96DT0 336 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 DPH2Q9BQC3 489 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 MIR1-1HGQ9H1L0 117 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 MAGIXQ9H6Y5 334 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 AMBNQ9NP70 447 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 NECTIN3Q9NQS3 549 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 DNMT3LQ9UJW3 386 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 PCDHGB1Q9Y5G3 927 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 GPC6Q9Y625 555 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 TTC34A8MYJ7 566 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 H7C0S8 307 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 K7ERQ8 282 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 M0QX08 132 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 RGS10O43665 173 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 CLDN11O75508 207 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 DNAJB5O75953 348 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 MYO1DO94832 1006 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 FKBP9O95302 570 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 CD36P16671 472 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 PSMA3P25788 255 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ACVR2AP27037 513 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 MZF1P28698 734 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 CORO1AP31146 461 aaKnown RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 KRT20P35900 424 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 SEPHS1P49903 392 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 FKBP9P1Q75LS8 142 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 TRIM46Q7Z4K8 759 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 CCDC71Q8IV32 467 aaPredicted RBP12.87□□□□□ -0.35
CLN3-210ENST00000563874 ATG16L2Q8NAA4 619 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ZNF566Q969W8 418 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 ACOT13Q9NPJ3 140 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 KIF17Q9P2E2 1029 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 PLXNA3P51805 1871 aa12.87□□□□□ -0.35
CLN3-210ENST00000563874 RFXANKO14593 260 aa12.86□□□□□ -0.35
CLN3-210ENST00000563874 ERN1O75460 977 aaKnown RBP12.86□□□□□ -0.35
CLN3-210ENST00000563874 ATF6P18850 670 aa12.86□□□□□ -0.35
CLN3-210ENST00000563874 ARHGDIAP52565 204 aa12.86□□□□□ -0.35
CLN3-210ENST00000563874 FCGRTP55899 365 aa12.86□□□□□ -0.35
CLN3-210ENST00000563874 TPTEP56180 551 aa12.86□□□□□ -0.35
CLN3-210ENST00000563874 RHOAP61586 193 aa12.86□□□□□ -0.35
CLN3-210ENST00000563874 IL18R1Q13478 541 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms