RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 IGFL3Q6UXB1 125 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 OTOAQ7RTW8 1153 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 FAM20CQ8IXL6 584 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 Q8NA96 180 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 TRIM58Q8NG06 486 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 CFAP61Q8NHU2 1237 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 IL17FQ96PD4 163 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 PSMG3-AS1Q96PY0 264 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 SLC26A1Q9H2B4 701 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 WDR54Q9H977 334 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 SLC39A10Q9ULF5 831 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 VPS4AQ9UN37 437 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 SOX13Q9UN79 622 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 A0A1B0GX78 115 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 FITM1A5D6W6 292 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 PEX12O00623 359 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 ITGAXP20702 1163 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 KCNJ1P48048 391 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 MYBPC3Q14896 1274 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 SF1Q15637 639 aaKnown RBP16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 INPP5JQ15735 1006 aaPredicted RBP16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 CTSL3PQ5NE16 218 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 RNF187Q5TA31 235 aaPredicted RBP16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 SLC6A19Q695T7 634 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 MRNIPQ6NTE8 343 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 GSTA5Q7RTV2 222 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 OVCH1Q7RTY7 1134 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 PPP1R32Q7Z5V6 425 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 SDCCAG8Q86SQ7 713 aaPredicted RBP16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 GSDMBQ8TAX9 411 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 MAGEC3Q8TD91 643 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 LPGAT1Q92604 370 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 MFSD3Q96ES6 412 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 LZTFL1Q9NQ48 299 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 P4HTMQ9NXG6 502 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 KLHL20Q9Y2M5 609 aa16.52■□□□□ 0.24
VPS9D1-203ENST00000563798 USP9YO00507 2555 aaPredicted RBP16.52■□□□□ 0.23
VPS9D1-203ENST00000563798 A6NL46 340 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 H3BMM5 538 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 DSCR3O14972 297 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 SRPX2O60687 465 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 VAPBO95292 243 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 MATN4O95460 622 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 ESR1P03372 595 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 PIM1P11309 404 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 GP1BBP13224 206 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 MGAT1P26572 445 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 GRIA3P42263 894 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 KCNJ11Q14654 390 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 GRM7Q14831 915 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 CYP2A13Q16696 494 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 KIAA0930Q6ICG6 404 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 GALNT16Q8N428 558 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 RAB42Q8N4Z0 105 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 C2orf73Q8N5S3 287 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 PRELID2Q8N945 189 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 CLEC1AQ8NC01 280 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 IRAK4Q9NWZ3 460 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 SYBUQ9NX95 663 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 IL1RAPL1Q9NZN1 696 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 SPATA7Q9P0W8 599 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 CIDEBQ9UHD4 219 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 TTC7AQ9ULT0 858 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 NFS1Q9Y697 457 aa16.51■□□□□ 0.23
VPS9D1-203ENST00000563798 A0A1W2PPV9 198 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 TCRBV7S3A2A0A539 114 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 PFDN6O15212 129 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 CEP104O60308 925 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 ERGP11308 486 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 OGNP20774 298 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 GNLYP22749 145 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 MMP11P24347 488 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 UQCRFS1P47985 274 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 EIF3BP55884 814 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 CCSMST1Q4G0I0 132 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 TTLL10Q6ZVT0 673 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 COX15Q7KZN9 410 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 LRRC8AQ8IWT6 810 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 OR2A1Q8NGT9 310 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 FOPNLQ96NB1 174 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 SPSB2Q99619 263 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 ZNF552Q9H707 407 aaPredicted RBP16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 SLAMF7Q9NQ25 335 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 CUTCQ9NTM9 273 aa16.5■□□□□ 0.23
VPS9D1-203ENST00000563798 AGPSO00116 658 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 CTSVO60911 334 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 IPO13O94829 963 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 ALPPP05187 535 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 ALAS2P22557 587 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 SARNPP82979 210 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 SLC9A5Q14940 896 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 NKG7Q16617 165 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 FAM214AQ32MH5 1076 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 TAX1BP1Q86VP1 789 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 OR2L3Q8NG85 312 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 SELENOSQ9BQE4 189 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 ATP13A2Q9NQ11 1180 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 NXT1Q9UKK6 140 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms