RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IER2Q9BTL4 223 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SGPP1Q9BX95 441 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 OSBPL10Q9BXB5 764 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 OR2AG1Q9H205 316 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 TUBB1Q9H4B7 451 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 RAD21L1Q9H4I0 556 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 NT5DC2Q9H857 520 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 CERS4Q9HA82 394 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 PELI2Q9HAT8 420 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 POLMQ9NP87 494 aaPredicted RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 FBXL12Q9NXK8 326 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 CLEC1BQ9P126 229 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 STOX2Q9P2F5 926 aaPredicted RBP7.31□□□□□ -1.24
VPS39-204ENST00000561818 FAM8A1Q9UBU6 413 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 CD84Q9UIB8 345 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 ADAMTS6Q9UKP5 1117 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 LRRC42Q9Y546 428 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 PCDHGA7Q9Y5G6 932 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 SNX13Q9Y5W8 968 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 COLEC10Q9Y6Z7 277 aa7.31□□□□□ -1.24
VPS39-204ENST00000561818 FAM221BA6H8Z2 402 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 MEI4A8MW99 385 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 EVPLLA8MZ36 301 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 LOC730098B7Z3J9 87 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 FPGTO14772 594 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 MID1O15344 667 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 GPR39O43194 453 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 MMP20O60882 483 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 GUCY1B2O75343 617 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ZNF217O75362 1048 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SEC22BO75396 215 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SOD1P00441 154 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ALDOCP09972 364 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 ERGP11308 486 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 IL1RNP18510 177 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ATP6V1C1P21283 382 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 IDSP22304 550 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SLC7A1P30825 629 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 AKT2P31751 481 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 DRD3P35462 400 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 TSFMP43897 325 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 CCR10P46092 362 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 TRPC1P48995 793 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 DGKEP52429 567 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 FOXA1P55317 472 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SH3BGRP55822 239 aaPredicted RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 RPS14P62263 151 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 RPL38P63173 70 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 MRPS35P82673 323 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 TXNL4AP83876 142 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 CHIT1Q13231 466 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PWP1Q13610 501 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 GRM2Q14416 872 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ZNF658BQ4V348 819 aaPredicted RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 TMEM259Q4ZIN3 620 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 XKR6Q5GH73 641 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 METRNLQ641Q3 311 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 LCN8Q6JVE9 175 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 GALNT18Q6P9A2 607 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PARM1Q6UWI2 310 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 WASH2PQ6VEQ5 465 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 GK5Q6ZS86 529 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 Q6ZSR9 355 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 CAMKMTQ7Z624 323 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 C17orf64Q86WR6 236 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 DCP2Q8IU60 420 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 SLC30A8Q8IWU4 369 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 RBM12BQ8IXT5 1001 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 CFAP206Q8IYR0 622 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PQLC1Q8N2U9 271 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PACRGLQ8N7B6 248 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 TRIML2Q8N7C3 387 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ICA1LQ8NDH6 482 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SRFBP1Q8NEF9 429 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 OR2T34Q8NGX1 318 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 FGF14Q92915 247 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 CCDC124Q96CT7 223 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 SIPA1Q96FS4 1042 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SHDQ96IW2 340 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SLC45A3Q96JT2 553 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 MARK4Q96L34 752 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 C3orf30Q96M34 536 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 RNF145Q96MT1 663 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 CCDC115Q96NT0 180 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 NR1H4Q96RI1 486 aaPredicted RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 KXD1Q9BQD3 176 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 AIF1LQ9BQI0 150 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 KLHL4Q9C0H6 718 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ALG2Q9H553 416 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 CLMPQ9H6B4 373 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 WASH6PQ9NQA3 447 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 SLC2A4RGQ9NR83 387 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ARMC1Q9NVT9 282 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ATXN10Q9UBB4 475 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 ZNF225Q9UK10 706 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 IKZF3Q9UKT9 509 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 TMPRSS11EQ9UL52 423 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 CNOT6Q9ULM6 557 aaKnown RBP7.3□□□□□ -1.24
VPS39-204ENST00000561818 ASF1AQ9Y294 204 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 BTRCQ9Y297 605 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms