RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PEX13Q92968 403 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 CUTCQ9NTM9 273 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 DUSP10Q9Y6W6 482 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 MDC1Q14676 2089 aaKnown RBP15.74■□□□□ 0.11
CLN3-208ENST00000561505 IGLV3-12A0A075B6K2 115 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 MACROD2A1Z1Q3 448 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 F8W8V4 182 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 LRRTM2O43300 516 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 ALAS2P22557 587 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 CETN2P41208 172 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 GDF10P55107 478 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 PER3P56645 1201 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 MFAP5Q13361 173 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 GRM7Q14831 915 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 TLR1Q15399 786 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 SPA17Q15506 151 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 FAM214AQ32MH5 1076 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 TUBB8Q3ZCM7 444 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 ATG9BQ674R7 924 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 FIGLAQ6QHK4 219 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 DCUN1D3Q8IWE4 304 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 ASZ1Q8WWH4 475 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 RELTQ969Z4 430 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 INTS7Q9NVH2 962 aaKnown RBP15.73■□□□□ 0.11
CLN3-208ENST00000561505 CDC23Q9UJX2 597 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 KLHL20Q9Y2M5 609 aa15.73■□□□□ 0.11
CLN3-208ENST00000561505 EPN1Q9Y6I3 576 aaPredicted RBP15.73■□□□□ 0.11
CLN3-208ENST00000561505 DIDO1Q9BTC0 2240 aaKnown RBP15.73■□□□□ 0.11
CLN3-208ENST00000561505 PDZD2O15018 2839 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 CCDC78A2IDD5 438 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 RASGRF2O14827 1237 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 HNRNPRO43390 633 aaKnown RBP15.72■□□□□ 0.11
CLN3-208ENST00000561505 CTSVO60911 334 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 KLHL18O94889 574 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 RPN2P04844 631 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 AOAHP28039 575 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 CYLC1P35663 651 aaPredicted RBP15.72■□□□□ 0.11
CLN3-208ENST00000561505 CDH17Q12864 832 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 TSTD2Q5T7W7 516 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 ISLR2Q6UXK2 745 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.72■□□□□ 0.11
CLN3-208ENST00000561505 PSMF1Q92530 271 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 HDAC10Q969S8 669 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 VPS50Q96JG6 964 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 CTSFQ9UBX1 484 aa15.72■□□□□ 0.11
CLN3-208ENST00000561505 REXO2Q9Y3B8 237 aaKnown RBP15.72■□□□□ 0.11
CLN3-208ENST00000561505 CSMD1Q96PZ7 3565 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 HEATR9A2RTY3 570 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 ALOX12BO75342 701 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 MED26O95402 600 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 GOT2P00505 430 aaKnown RBP15.71■□□□□ 0.11
CLN3-208ENST00000561505 HPP00738 406 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 PTMSP20962 102 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 MCM3P25205 808 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 SOX11P35716 441 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 GRIA3P42263 894 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 TDGF1P3P51864 188 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 EMP3P54852 163 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 SEMA3AQ14563 771 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 SYTL3Q4VX76 610 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 AFTPHQ6ULP2 937 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 PARP9Q8IXQ6 854 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 OR52K1Q8NGK4 314 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 OR4L1Q8NH43 312 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 LKAAEAR1Q8TD35 194 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 ZNF778Q96MU6 729 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 ALS2CR12Q96Q35 445 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 TTC1Q99614 292 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 LACRTQ9GZZ8 138 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 EPS8L2Q9H6S3 715 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 PIH1D1Q9NWS0 290 aaKnown RBP15.71■□□□□ 0.11
CLN3-208ENST00000561505 IMPACTQ9P2X3 320 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 OSGIN2Q9Y236 505 aa15.71■□□□□ 0.11
CLN3-208ENST00000561505 R3HDM2Q9Y2K5 976 aaKnown RBP15.71■□□□□ 0.11
CLN3-208ENST00000561505 FBN2P35556 2912 aa15.71■□□□□ 0.1
CLN3-208ENST00000561505 A0A1B0GUH1 482 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 GRID2IPA4D2P6 1211 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 PRF1P14222 555 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 ADRA1DP25100 572 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 STIP1P31948 543 aaKnown RBP15.7■□□□□ 0.1
CLN3-208ENST00000561505 CARSP49589 748 aaKnown RBP15.7■□□□□ 0.1
CLN3-208ENST00000561505 HSPA14Q0VDF9 509 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 CDC16Q13042 620 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 CCDC38Q502W7 563 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 PRMT9Q6P2P2 845 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 NLRP9Q7RTR0 991 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 OR2A1Q8NGT9 310 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 HAS2Q92819 552 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 THOC3Q96J01 351 aaKnown RBP15.7■□□□□ 0.1
CLN3-208ENST00000561505 IL17FQ96PD4 163 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 PANX2Q96RD6 677 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 MESP1Q9BRJ9 268 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 TMEM121Q9BTD3 319 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 RAB11FIP5Q9BXF6 653 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 P2RY12Q9H244 342 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 SLC2A6Q9UGQ3 507 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 ZGRF1Q86YA3 2104 aa15.7■□□□□ 0.1
CLN3-208ENST00000561505 A0A1W2PPV9 198 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 GOLGA6L9A6NEM1 432 aa15.69■□□□□ 0.1
CLN3-208ENST00000561505 PCDH17O14917 1159 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms