RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ACSL5Q9ULC5 683 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 RNF112Q9ULX5 631 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 PCDHB11Q9Y5F2 797 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 ANKRD36A6QL64 1941 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 DOPEY2Q9Y3R5 2298 aa11.48□□□□□ -0.57
LDLR-212ENST00000560467 IFRD1O00458 451 aaPredicted RBP11.47□□□□□ -0.57
LDLR-212ENST00000560467 BTN3A1O00481 513 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 B4GAT1O43505 415 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 ZBTB14O43829 449 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 KDM1AO60341 852 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 H2AFYO75367 372 aaKnown RBP11.47□□□□□ -0.57
LDLR-212ENST00000560467 C8GP07360 202 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 CREB1P16220 341 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 TFEBP19484 476 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 PBLDP30039 288 aaPredicted RBP11.47□□□□□ -0.57
LDLR-212ENST00000560467 GLRBP48167 497 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 OR1D5P58170 312 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 B4GALNT1Q00973 533 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 TLE1Q04724 770 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 RPA4Q13156 261 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 LRP8Q14114 963 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 ZNF460Q14592 562 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 CFAP157Q5JU67 520 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 ZNF648Q5T619 568 aaPredicted RBP11.47□□□□□ -0.57
LDLR-212ENST00000560467 SH2D5Q6ZV89 423 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 NEK10Q6ZWH5 1172 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 CPNE9Q8IYJ1 553 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 RCBTB1Q8NDN9 531 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 ARMC2Q8NEN0 867 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 OR2L2Q8NH16 312 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 RHEBL1Q8TAI7 183 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 HM13Q8TCT9 377 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 CD200R1Q8TD46 325 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 MAGEC3Q8TD91 643 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 MCOLN3Q8TDD5 553 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 LRRC8CQ8TDW0 803 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 EEF1AKMT1Q8WVE0 214 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 LINC00615Q96LM1 132 aaPredicted RBP11.47□□□□□ -0.57
LDLR-212ENST00000560467 NUDT22Q9BRQ3 303 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 LGR4Q9BXB1 951 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 CYP4F12Q9HCS2 524 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 GEMIN8Q9NWZ8 242 aaKnown RBP11.47□□□□□ -0.57
LDLR-212ENST00000560467 TMPRSS11EQ9UL52 423 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 SLC17A4Q9Y2C5 497 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 PRSS21Q9Y6M0 314 aa11.47□□□□□ -0.57
LDLR-212ENST00000560467 SLC16A5O15375 505 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 NUDT21O43809 227 aaKnown RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 PLIN3O60664 434 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CATP04040 527 aaKnown RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 MPC1LP0DKB6 136 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 SFTPCP11686 197 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 GFAPP14136 432 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CD1DP15813 335 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 PNLIPP16233 465 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CYP2A7P20853 494 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 IDSP22304 550 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 ATP5F1P24539 256 aaPredicted RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 CD82P27701 267 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CCR7P32248 378 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 SERPINB4P48594 390 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 NAA20P61599 178 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 IRF9Q00978 393 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 KRT33BQ14525 404 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 C16orf46Q6P387 395 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 ZNF574Q6ZN55 896 aaPredicted RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 MICALCLQ6ZW33 695 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CHST15Q7LFX5 561 aaPredicted RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 PTRH1Q86Y79 214 aaKnown RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 GPSM1Q86YR5 675 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 SPATA6LQ8N4H0 392 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 RAB42Q8N4Z0 105 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 KIAA1191Q96A73 305 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CCDC74BQ96LY2 380 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 TIMM29Q9BSF4 260 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 SLC12A9Q9BXP2 914 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 SLC25A18Q9H1K4 315 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 ALG9Q9H6U8 611 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CARS2Q9HA77 564 aaKnown RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 TMEM216Q9P0N5 145 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 CPSF2Q9P2I0 782 aaKnown RBP11.46□□□□□ -0.57
LDLR-212ENST00000560467 FAM8A1Q9UBU6 413 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 ADAM21Q9UKJ8 722 aa11.46□□□□□ -0.57
LDLR-212ENST00000560467 PRSS38A1L453 326 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 WDR91A4D1P6 747 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 SUPT3HB4E1H0 165 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 CHUKO15111 745 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 TRIM13O60858 407 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 SUPT3HO75486 399 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 SNUPNO95149 360 aaKnown RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 CPNE6O95741 557 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 ENO2P09104 434 aaPredicted RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 SLC35G4P0C7Q5 338 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 GRK2P25098 689 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 ALDH4A1P30038 563 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 CA5AP35218 305 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 HALP42357 657 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 GNPDA1P46926 289 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 CTSCP53634 463 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 ILF3Q12906 894 aaKnown RBP eCLIP11.45□□□□□ -0.583e-8■■□□□ 11.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms