RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 NAT14Q8WUY8 206 aa13.13□□□□□ -0.31
SMAD3-214ENST00000560402 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.13□□□□□ -0.317e-6■■■■■ 27.5
SMAD3-214ENST00000560402 PPM1MQ96MI6 270 aa13.13□□□□□ -0.31
SMAD3-214ENST00000560402 IP6K3Q96PC2 410 aa13.13□□□□□ -0.31
SMAD3-214ENST00000560402 CAPS2Q9BXY5 557 aa13.13□□□□□ -0.31
SMAD3-214ENST00000560402 RAB6BQ9NRW1 208 aa13.13□□□□□ -0.31
SMAD3-214ENST00000560402 RP1L1Q8IWN7 2480 aaPredicted RBP13.13□□□□□ -0.31
SMAD3-214ENST00000560402 SPTBN1Q01082 2364 aaKnown RBP13.13□□□□□ -0.31
SMAD3-214ENST00000560402 SHANK1Q9Y566 2161 aa13.13□□□□□ -0.31
SMAD3-214ENST00000560402 TTLL8A6PVC2 850 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 F8W8V4 182 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 BTN3A3O00478 584 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 PSMD3O43242 534 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 KDM1AO60341 852 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 CDH16O75309 829 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 SORBS2O94875 1100 aaKnown RBP13.12□□□□□ -0.31
SMAD3-214ENST00000560402 FTH1P02794 183 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 CD63P08962 238 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 SHMT2P34897 504 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 NSG1P42857 185 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 CCL11P51671 97 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 PPP2R2AP63151 447 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 CDK16Q00536 496 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 PLOD1Q02809 727 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-214ENST00000560402 CHAF1BQ13112 559 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 KYNUQ16719 465 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 KLHL38Q2WGJ6 581 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 PACS1Q6VY07 963 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 GPR135Q8IZ08 494 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 ZBED8Q8IZ13 594 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 NAT8LQ8N9F0 302 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 C19orf47Q8N9M1 422 aaKnown RBP13.12□□□□□ -0.31
SMAD3-214ENST00000560402 GLIS1Q8NBF1 620 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 TFGQ92734 400 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-214ENST00000560402 LRRC39Q96DD0 335 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 TRAPPC9Q96Q05 1148 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 HGH1Q9BTY7 390 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 CHRNA10Q9GZZ6 450 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 EPB41L4BQ9H329 900 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 FAM96AQ9H5X1 160 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 XAB2Q9HCS7 855 aaKnown RBP13.12□□□□□ -0.31
SMAD3-214ENST00000560402 ACTR10Q9NZ32 417 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 NOVA2Q9UNW9 492 aaKnown RBP13.12□□□□□ -0.31
SMAD3-214ENST00000560402 AP1M2Q9Y6Q5 423 aa13.12□□□□□ -0.31
SMAD3-214ENST00000560402 EXOC1LA0A1B0GW35 172 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 SMIM23A6NLE4 172 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 TP73O15350 636 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 KLHL41O60662 606 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 SNRNP200O75643 2136 aaKnown RBP13.11□□□□□ -0.31
SMAD3-214ENST00000560402 IGHEP01854 428 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 CAPN1P07384 714 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 GSTA2P09210 222 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 TPSB2P20231 275 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 AGXTP21549 392 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 PSMA3P25788 255 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 PDHA2P29803 388 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 HPDP32754 393 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-214ENST00000560402 TPSAB1Q15661 275 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 DBN1Q16643 649 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 CCDC38Q502W7 563 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 SPESP1Q6UW49 350 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 TAS2R42Q7RTR8 314 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 PRUNE1Q86TP1 453 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 LINC00523Q86TU6 105 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 PALM2Q8IXS6 379 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 TBC1D21Q8IYX1 336 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 ADGRF3Q8IZF5 1079 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 MCUQ8NE86 351 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 PROKR1Q8TCW9 393 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 N4BP2L2Q92802 583 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-214ENST00000560402 ZBTB9Q96C00 473 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 TCTN2Q96GX1 697 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 PSMG3-AS1Q96PY0 264 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 SLC29A3Q9BZD2 475 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 GPR83Q9NYM4 423 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 POLG2Q9UHN1 485 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 SRPK3Q9UPE1 567 aa13.11□□□□□ -0.31
SMAD3-214ENST00000560402 NBPF19A0A087WUL8 3843 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 CCL22O00626 93 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 AP2A1O95782 977 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 SHBGP04278 402 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 MAGEA6P43360 314 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 GYS2P54840 703 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 MAGOHP61326 146 aaKnown RBP13.1□□□□□ -0.31
SMAD3-214ENST00000560402 SPARCL1Q14515 664 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 KCNJ11Q14654 390 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 POU6F1Q14863 301 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 BBS9Q3SYG4 887 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 SYTL3Q4VX76 610 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 FHL5Q5TD97 284 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 PRAMEF17Q5VTA0 474 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 LYPLAL1Q5VWZ2 237 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 ZNF385CQ66K41 422 aaPredicted RBP13.1□□□□□ -0.31
SMAD3-214ENST00000560402 CDHR3Q6ZTQ4 885 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 UHMK1Q8TAS1 419 aaKnown RBP13.1□□□□□ -0.31
SMAD3-214ENST00000560402 CDKN2AIPNLQ96HQ2 116 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 SGSM3Q96HU1 749 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 TTC1Q99614 292 aa13.1□□□□□ -0.31
SMAD3-214ENST00000560402 EIF2B3Q9NR50 452 aaKnown RBP13.1□□□□□ -0.31
SMAD3-214ENST00000560402 OR6C2Q9NZP2 312 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms