RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 AP1S2P56377 157 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 ARHGAP19Q14CB8 494 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 TGFBIQ15582 683 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 TECRLQ5HYJ1 363 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 SPESP1Q6UW49 350 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 SH2D5Q6ZV89 423 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 RIBC1Q8N443 379 aaPredicted RBP21.04■□□□□ 0.96
SNX1-210ENST00000560260 RAB42Q8N4Z0 105 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 FBXL8Q96CD0 374 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 ZDHHC12Q96GR4 267 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 PITPNM3Q9BZ71 974 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 ROPN1BQ9BZX4 212 aaPredicted RBP21.04■□□□□ 0.96
SNX1-210ENST00000560260 ROPN1Q9HAT0 212 aaPredicted RBP21.04■□□□□ 0.96
SNX1-210ENST00000560260 LNPEPQ9UIQ6 1025 aa21.04■□□□□ 0.96
SNX1-210ENST00000560260 MED19A0JLT2 244 aaPredicted RBP21.03■□□□□ 0.96
SNX1-210ENST00000560260 ISM1B1AKI9 464 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 KERAO60938 352 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 ANKRD34CP0C6C1 535 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 PYGBP11216 843 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 TBPL1P62380 186 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 YBX1P67809 324 aaKnown RBP21.03■□□□□ 0.96
SNX1-210ENST00000560260 CDKL1Q00532 357 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 KIR2DS3Q14952 304 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 FAM83EQ2M2I3 478 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 C18orf21Q32NC0 220 aaPredicted RBP21.03■□□□□ 0.96
SNX1-210ENST00000560260 CACHD1Q5VU97 1274 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 AGTRAPQ6RW13 159 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 FRA10AC1Q70Z53 315 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 SYTL1Q8IYJ3 562 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 SMPDL3AQ92484 453 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 EXT2Q93063 718 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 CD180Q99467 661 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 SCNM1Q9BWG6 230 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 ATG10Q9H0Y0 220 aa21.03■□□□□ 0.96
SNX1-210ENST00000560260 PRAMEF10O60809 474 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 RASSF9O75901 435 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 MT-ND3P03897 115 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 HIST1H2AGP0C0S8 130 aaPredicted RBP21.02■□□□□ 0.95
SNX1-210ENST00000560260 ST6GAL1P15907 406 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 KRT15P19012 456 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 HIST1H2ADP20671 130 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 OAS2P29728 719 aaKnown RBP21.02■□□□□ 0.95
SNX1-210ENST00000560260 CAMK2BQ13554 666 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 TRA2AQ13595 282 aaKnown RBP eCLIP21.02■□□□□ 0.953e-6■■□□□ 12.9
SNX1-210ENST00000560260 GPSM1Q86YR5 675 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 OR2A1Q8NGT9 310 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 LIN37Q96GY3 246 aaPredicted RBP21.02■□□□□ 0.95
SNX1-210ENST00000560260 HIST1H2AHQ96KK5 128 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 HIST1H2AJQ99878 128 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 H2AFJQ9BTM1 129 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 TRIM54Q9BYV2 358 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 KLHL25Q9H0H3 589 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 ZNF768Q9H5H4 540 aaKnown RBP21.02■□□□□ 0.95
SNX1-210ENST00000560260 RNF112Q9ULX5 631 aa21.02■□□□□ 0.95
SNX1-210ENST00000560260 NCF1BA6NI72 391 aaPredicted RBP21.01■□□□□ 0.95
SNX1-210ENST00000560260 NCF1CA8MVU1 366 aaPredicted RBP21.01■□□□□ 0.95
SNX1-210ENST00000560260 UBXN8O00124 270 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 COL6A2P12110 1019 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 HGFP14210 728 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 NCF1P14598 390 aaPredicted RBP21.01■□□□□ 0.95
SNX1-210ENST00000560260 CDH3P22223 829 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 HSD17B2P37059 387 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 SEPHS1P49903 392 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 NAE1Q13564 534 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 TSTA3Q13630 321 aaPredicted RBP21.01■□□□□ 0.95
SNX1-210ENST00000560260 ACAP2Q15057 778 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 SLC5A12Q1EHB4 618 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 KRT71Q3SY84 523 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 CDHR3Q6ZTQ4 885 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 ACMSDQ8TDX5 336 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 KLHL6Q8WZ60 621 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 RHBDF1Q96CC6 855 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 CABS1Q96KC9 395 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 TRAPPC9Q96Q05 1148 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 TMEM79Q9BSE2 394 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 ACAT2Q9BWD1 397 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 XPR1Q9UBH6 696 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 TAC3Q9UHF0 121 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 SH2B3Q9UQQ2 575 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 KLHL20Q9Y2M5 609 aa21.01■□□□□ 0.95
SNX1-210ENST00000560260 A0A0J9YY10 115 aa21■□□□□ 0.95
SNX1-210ENST00000560260 SLC9B1P1A6NJY1 282 aa21■□□□□ 0.95
SNX1-210ENST00000560260 TOX3O15405 576 aaPredicted RBP21■□□□□ 0.95
SNX1-210ENST00000560260 TAPBPO15533 448 aa21■□□□□ 0.95
SNX1-210ENST00000560260 MTHFD2P13995 350 aa21■□□□□ 0.95
SNX1-210ENST00000560260 CASP8Q14790 479 aa21■□□□□ 0.95
SNX1-210ENST00000560260 ZIC1Q15915 447 aa21■□□□□ 0.95
SNX1-210ENST00000560260 FBXO48Q5FWF7 155 aa21■□□□□ 0.95
SNX1-210ENST00000560260 LRIG3Q6UXM1 1119 aa21■□□□□ 0.95
SNX1-210ENST00000560260 TRABD2AQ86V40 505 aa21■□□□□ 0.95
SNX1-210ENST00000560260 PDPRQ8NCN5 879 aa21■□□□□ 0.95
SNX1-210ENST00000560260 OR56A3Q8NH54 315 aa21■□□□□ 0.95
SNX1-210ENST00000560260 RHEBL1Q8TAI7 183 aa21■□□□□ 0.95
SNX1-210ENST00000560260 STAG3L4Q8TBR4 150 aa21■□□□□ 0.95
SNX1-210ENST00000560260 PYCR2Q96C36 320 aa21■□□□□ 0.95
SNX1-210ENST00000560260 SLC41A2Q96JW4 573 aa21■□□□□ 0.95
SNX1-210ENST00000560260 MIPEPQ99797 713 aa21■□□□□ 0.95
SNX1-210ENST00000560260 EGFL8Q99944 293 aa21■□□□□ 0.95
SNX1-210ENST00000560260 SGPP1Q9BX95 441 aa21■□□□□ 0.95
SNX1-210ENST00000560260 C1GALT1Q9NS00 363 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms