RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CPNE3O75131 537 aaKnown RBP11.06□□□□□ -0.64
LDLR-208ENST00000558518 WEE1P30291 646 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 SSTR4P31391 388 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 BMPR1AP36894 532 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 CTSKP43235 329 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 LRRC73Q5JTD7 316 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 FAM180BQ6P0A1 224 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 NEK5Q6P3R8 708 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 GALNT12Q8IXK2 581 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 TMEM132CQ8N3T6 1108 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 PAPD5Q8NDF8 572 aaKnown RBP11.06□□□□□ -0.64
LDLR-208ENST00000558518 TRNT1Q96Q11 434 aaKnown RBP11.06□□□□□ -0.64
LDLR-208ENST00000558518 SLIRPQ9GZT3 109 aaKnown RBP11.06□□□□□ -0.64
LDLR-208ENST00000558518 CLPBQ9H078 707 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 ATG10Q9H0Y0 220 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 NMRK2Q9NPI5 230 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 A0A0C4DFX4 3053 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 MYLKQ15746 1914 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 PCDHGA12O60330 932 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 CKMT1AP12532 417 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 CD52P31358 61 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 SLC26A3P40879 764 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 HSPA14Q0VDF9 509 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 ARMCX4Q5H9R4 360 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 NRARPQ7Z6K4 114 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 MMAAQ8IVH4 418 aaKnown RBP11.06□□□□□ -0.64
LDLR-208ENST00000558518 RHEBL1Q8TAI7 183 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 IL4I1Q96RQ9 567 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 ITPAQ9BY32 194 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 ATP13A1Q9HD20 1204 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 SNTG1Q9NSN8 517 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 QPCTLQ9NXS2 382 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 NOD1Q9Y239 953 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 ZNF646O15015 1829 aaPredicted RBP11.06□□□□□ -0.64
LDLR-208ENST00000558518 C17orf102A2RUQ5 167 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TRIM64A6NGJ6 449 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 MEN1O00255 615 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 SLC25A14O95258 325 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 OTCP00480 354 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 PSEN2P49810 448 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 NFKB2Q00653 900 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 GANABQ14697 944 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 DUSP28Q4G0W2 176 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 RAB41Q5JT25 222 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 ATXN7L2Q5T6C5 722 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 CXCL17Q6UXB2 119 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 GDPD3Q7L5L3 318 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 CADM2Q8N3J6 435 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 GPR156Q8NFN8 814 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 RHBDF1Q96CC6 855 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 RTP3Q9BQQ7 232 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 HOXD1Q9GZZ0 328 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 IRF2BPLQ9H1B7 796 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 CCSER2Q9H7U1 834 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 AASDHPPTQ9NRN7 309 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 THUMPD1Q9NXG2 353 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 KIAA1522Q9P206 1035 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 IFT52Q9Y366 437 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 N6AMT1Q9Y5N5 214 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 NUMA1Q14980 2115 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 A0A0G2JLL6 359 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 PDHXO00330 501 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 NDST3O95803 873 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 FABP3P05413 133 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 NUDT7P0C024 238 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 HLA-DPA1P20036 260 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 GRK5P34947 590 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TBRG1Q3YBR2 411 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 USP39Q53GS9 565 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 AFTPHQ6ULP2 937 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 PRRT2Q7Z6L0 340 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 LRRC49Q8IUZ0 686 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TMEM86AQ8N2M4 240 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 CLIP3Q96DZ5 547 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 PGAP3Q96FM1 320 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 HSH2DQ96JZ2 352 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 PPP3R2Q96LZ3 170 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TINF2Q9BSI4 451 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 AP5M1Q9H0R1 490 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 RPRD1BQ9NQG5 326 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 NECTIN3Q9NQS3 549 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 ARL15Q9NXU5 204 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 SH3BP4Q9P0V3 963 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 AGAP5A6NIR3 686 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 SCELO95171 688 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 APOL3O95236 402 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 GBAP04062 536 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 BCKDHAP12694 445 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 LPOP22079 712 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 CD6P30203 668 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 RRM2P31350 389 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 PBX3P40426 434 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 HUNKP57058 714 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 SLC35A2P78381 396 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 CYP4F8P98187 520 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TAF10Q12962 218 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TSTQ16762 297 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 ZMAT1Q5H9K5 638 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 CPZQ66K79 652 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 ZNF605Q86T29 641 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms