RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ABLIM3O94929 683 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 WDR47O94967 919 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 BCL10O95999 233 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 COL6A1P12109 1028 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 ATN1P54259 1190 aaPredicted RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 CASP9P55211 416 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 GP2P55259 537 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 AP1S1P61966 158 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 PTSQ03393 145 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 TTC23Q5W5X9 447 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 MACC1Q6ZN28 852 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 DCAF4L2Q8NA75 395 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 PJA1Q8NG27 643 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 ASIC4Q96FT7 647 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 P2RY13Q9BPV8 354 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 ELOVL6Q9H5J4 265 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 SLC1A7O00341 560 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 SPAM1P38567 509 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 IL5RAQ01344 420 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 DDX39BQ13838 428 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 SKIV2LQ15477 1246 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 SPOUT1Q5T280 376 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 PRR23BQ6ZRT6 265 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 UBE2R2Q712K3 238 aaPredicted RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 PLPP6Q8IY26 295 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 HJURPQ8NCD3 748 aaPredicted RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 HDAC2Q92769 488 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 RBM4BQ9BQ04 359 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 RBM4Q9BWF3 364 aaKnown RBP12.55□□□□□ -0.4
LDLR-207ENST00000558013 ALOXE3Q9BYJ1 711 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 FAIMQ9NVQ4 179 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 PSME2Q9UL46 239 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 GMEB1Q9Y692 573 aa12.55□□□□□ -0.4
LDLR-207ENST00000558013 NOL3O60936 208 aaKnown RBP12.54□□□□□ -0.4
LDLR-207ENST00000558013 SCELO95171 688 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ANXA5P08758 320 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 MSH3P20585 1137 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 GSTM2P28161 218 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 NRIP1P48552 1158 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 GSSP48637 474 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 TMBIM6P55061 237 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 FPGSQ05932 587 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ITGADQ13349 1161 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ZCCHC8Q6NZY4 707 aaKnown RBP12.54□□□□□ -0.4
LDLR-207ENST00000558013 CRTC3Q6UUV7 619 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 CALHM3Q86XJ0 350 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 CMTM8Q8IZV2 173 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ARL10Q8N8L6 244 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 LMNTD1Q8N9Z9 388 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 SCAMP4Q969E2 229 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 MTERF1Q99551 399 aaKnown RBP12.54□□□□□ -0.4
LDLR-207ENST00000558013 HTATIP2Q9BUP3 242 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 C2orf49Q9BVC5 232 aaPredicted RBP12.54□□□□□ -0.4
LDLR-207ENST00000558013 RIBC2Q9H4K1 309 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 TMEM45AQ9NWC5 275 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ERVK-18Q9QC07 812 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 TRPS1Q9UHF7 1281 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 BAG5Q9UL15 447 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ANAPC1Q9H1A4 1944 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 FUCA1P04066 466 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 JUNBP17275 347 aaPredicted RBP12.54□□□□□ -0.4
LDLR-207ENST00000558013 TGFBR1P36897 503 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 EMX1Q04741 257 aaPredicted RBP12.54□□□□□ -0.4
LDLR-207ENST00000558013 DGCR6Q14129 220 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 RETSATQ6NUM9 610 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 CROCCP3Q8IVE0 287 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 ZDHHC21Q8IVQ6 265 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 CLECL1Q8IZS7 167 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 EID3Q8N140 333 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 RAET1EQ8TD07 263 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 OVCA2Q8WZ82 227 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 PYURFQ96I23 114 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 TUBA1CQ9BQE3 449 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 SLC32A1Q9H598 525 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 TBC1D23Q9NUY8 699 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 SRRDQ9UH36 339 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 SLCO3A1Q9UIG8 710 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 STOML2Q9UJZ1 356 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 BTBD3Q9Y2F9 522 aa12.54□□□□□ -0.4
LDLR-207ENST00000558013 TMEM202A6NGA9 273 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 RFXANKO14593 260 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 EFEMP2O95967 443 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 INHAP05111 366 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CKMP06732 381 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 NUDT7P0C024 238 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CLDN8P56748 225 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 VLDLRP98155 873 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 FOXD4Q12950 439 aaPredicted RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 CDK5R2Q13319 367 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 NR1D2Q14995 579 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 RBM48Q5RL73 367 aaKnown RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 CPZQ66K79 652 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ADHFE1Q8IWW8 467 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 HS6ST3Q8IZP7 471 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ZCCHC7Q8N3Z6 543 aaKnown RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 GLB1L3Q8NCI6 653 aaPredicted RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 BORCS5Q969J3 196 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 NODALQ96S42 347 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 PCDH12Q9NPG4 1184 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CFAP97Q9P2B7 532 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms