RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TP63	Q9H3D4	680 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SIAE	Q9HAT2	523 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TM9SF3	Q9HD45	589 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TIGAR	Q9NQ88	270 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ADARB2	Q9NS39	739 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAB23	Q9ULC3	237 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NT5C1B-RDH14	C9J2C7	533 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005		M0R129	80 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SOX14	O95416	240 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CSF2	P04141	144 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	YES1	P07947	543 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ANXA4	P09525	319 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NR2F1	P10589	423 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DARS	P14868	501 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GADD45A	P24522	165 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DNAJB1	P25685	340 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TIE1	P35590	1138 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IFNGR2	P38484	337 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	KIR3DL1	P43629	444 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF157	P51786	506 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRIM71	Q2Q1W2	868 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	KIAA1614	Q5VZ46	1190 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CES4A	Q5XG92	561 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GALNT10	Q86SR1	603 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC37A3	Q8NCC5	494 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR13J1	Q8NGT2	312 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	BRSK1	Q8TDC3	778 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PTER	Q96BW5	349 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	L3HYPDH	Q96EM0	354 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CORO1B	Q9BR76	489 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DSN1	Q9H410	356 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	VRTN	Q9H8Y1	702 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ANKH	Q9HCJ1	492 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	EQTN	Q9NQ60	294 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAD18	Q9NS91	495 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NLE1	Q9NVX2	485 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DUS2	Q9NX74	493 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NKIRAS2	Q9NYR9	191 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	POU2F3	Q9UKI9	436 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRELID1	Q9Y255	219 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACTL7A	Q9Y615	435 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CPQ	Q9Y646	472 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	MYH11	P35749	1972 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SMIM35	A0A1B0GVV1	85 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM172BP	A6NC97	362 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ISM1	B1AKI9	464 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	AREL1	O15033	823 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	KPNA5	O15131	536 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SMAD9	O15198	467 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC7A4	O43246	635 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SGTA	O43765	313 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	BCAS1	O75363	584 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DDN	O94850	711 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IL4R	P24394	825 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CORO1A	P31146	461 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	EPHB3	P54753	998 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCNAB2	Q13303	367 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPATS1	Q496A3	300 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DCST1	Q5T197	706 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PIK3R6	Q5UE93	754 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	BLOC1S3	Q6QNY0	202 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DPP10	Q8N608	796 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM98A	Q8NCA5	519 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM125	Q96AQ2	219 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	BTN2A3P	Q96KV6	586 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	C8orf48	Q96LL4	319 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TINF2	Q9BSI4	451 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CIPC	Q9C0C6	399 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RACGAP1	Q9H0H5	632 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZFYVE1	Q9HBF4	777 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM105A	Q9NUU6	356 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	DNAJC11	Q9NVH1	559 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ANKMY1	Q9P2S6	941 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RIMKLB	Q9ULI2	386 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CARD8	Q9Y2G2	431 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHB9	Q9Y5E1	797 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSAP	A4D1B5	854 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	LOC730098	B7Z3J9	87 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NUAK1	O60285	661 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	MPZL2	O60487	215 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDK14	O94921	469 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRL	P01236	227 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRG2	P13727	222 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	FDXR	P22570	491 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	HTR1E	P28566	365 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	NTS	P30990	170 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATP5C1	P36542	298 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	HCAR3	P49019	387 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ANXA11	P50995	505 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	XK	P51811	444 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TUBA1B	P68363	451 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	STX4	Q12846	297 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	E2F2	Q14209	437 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SF1	Q15637	639 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IFI44L	Q53G44	452 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SETMAR	Q53H47	684 aa	Predicted RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPANXN4	Q5MJ08	99 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TUBA1A	Q71U36	451 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF367	Q7RTV3	350 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPART	Q8N0X7	666 aa		4.87	□□□□□ -1.63

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