RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 IARS2Q9NSE4 1012 aaKnown RBP12.1□□□□□ -0.47
SHMT2-214ENST00000554604 ZDHHC3Q9NYG2 299 aa12.1□□□□□ -0.47
SHMT2-214ENST00000554604 IL1RAPL1Q9NZN1 696 aa12.1□□□□□ -0.47
SHMT2-214ENST00000554604 CFAP20Q9Y6A4 193 aaKnown RBP12.1□□□□□ -0.47
SHMT2-214ENST00000554604 CFAP46Q8IYW2 2715 aa12.1□□□□□ -0.47
SHMT2-214ENST00000554604 SPTBP11277 2137 aa12.1□□□□□ -0.47
SHMT2-214ENST00000554604 CCDC78A2IDD5 438 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 H7C0S8 307 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 POLR1CO15160 346 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 TOX3O15405 576 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 EFSO43281 561 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 PLIN3O60664 434 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 C9P02748 559 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 ANKRD34CP0C6C1 535 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 MTHFD1P11586 935 aaKnown RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 ACRV1P26436 265 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 LEPRP48357 1165 aaKnown RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 ARCN1P48444 511 aaKnown RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 PRLHRP49683 370 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CDKN1CP49918 316 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CSRP3P50461 194 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 ARSDP51689 593 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CACNG1Q06432 222 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 SF3A3Q12874 501 aaKnown RBP eCLIP12.09□□□□□ -0.471e-13■■■□□ 16.4
SHMT2-214ENST00000554604 BNIP1Q12981 228 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 SRSF6Q13247 344 aaKnown RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 LAMB3Q13751 1172 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 SPRED3Q2MJR0 410 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CCDC153Q494R4 210 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CACHD1Q5VU97 1274 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 FAM92BQ6ZTR7 304 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 NLRP9Q7RTR0 991 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 SERPINA9Q86WD7 417 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 C10orf67Q8IYJ2 551 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 GPR150Q8NGU9 434 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 HM13Q8TCT9 377 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 NKD1Q969G9 470 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CDKN2AIPNLQ96HQ2 116 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 VPS39Q96JC1 886 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 LINC00615Q96LM1 132 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-214ENST00000554604 RMDN2Q96LZ7 410 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 ZNF778Q96MU6 729 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 GPR22Q99680 433 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 CCM2Q9BSQ5 444 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 FAM167BQ9BTA0 163 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 EMCNQ9ULC0 261 aa12.09□□□□□ -0.47
SHMT2-214ENST00000554604 TLN1Q9Y490 2541 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 GCN1Q92616 2671 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 SNNO75324 88 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 UBOX5O94941 541 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 PROCP04070 461 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 PRB1P04280 392 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 SKIV2L2P42285 1042 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 ILF2Q12905 390 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 THOC5Q13769 683 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 COL9A2Q14055 689 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 SETDB1Q15047 1291 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 TSTD2Q5T7W7 516 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 ARMC6Q6NXE6 501 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 KIAA0408Q6ZU52 694 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 GALNT7Q86SF2 657 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 ZC3HC1Q86WB0 502 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 FITM2Q8N6M3 262 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 SPDYE1Q8NFV5 336 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 CALML6Q8TD86 181 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 PEX13Q92968 403 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 WBP1Q96G27 269 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 INSM2Q96T92 566 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 RASSF4Q9H2L5 321 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 APMAPQ9HDC9 416 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 EPHA6Q9UF33 1036 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 MTO1Q9Y2Z2 717 aaKnown RBP12.08□□□□□ -0.48
SHMT2-214ENST00000554604 PCDHGA4Q9Y5G9 962 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 HEBP2Q9Y5Z4 205 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 CAPN7Q9Y6W3 813 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 COLEC10Q9Y6Z7 277 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 SEC16AO15027 2179 aa12.08□□□□□ -0.48
SHMT2-214ENST00000554604 HELZ2Q9BYK8 2649 aaKnown RBP12.07□□□□□ -0.48
SHMT2-214ENST00000554604 IGLV3-16A0A075B6K0 115 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 A0A096LPK6 155 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 TRBV5-4A0A0C4DH59 114 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 C17orf113A0A1B0GUU1 675 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 MROH6A6NGR9 719 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 IFRD1O00458 451 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-214ENST00000554604 SGTAO43765 313 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 KIF1CO43896 1103 aaKnown RBP12.07□□□□□ -0.48
SHMT2-214ENST00000554604 RAD1O60671 282 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 STK17BO94768 372 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 VAPBO95292 243 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 APOA4P06727 396 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 PRSS56P0CW18 603 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 COL6A2P12110 1019 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 ARNTP27540 789 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 NDUFS1P28331 727 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 ARL4DP49703 201 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 OCRLQ01968 901 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 C19orf57Q0VDD7 668 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 BST1Q10588 318 aa12.07□□□□□ -0.48
SHMT2-214ENST00000554604 CHI3L2Q15782 390 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms