RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 DOK1Q99704 481 aa12.58□□□□□ -0.39
SHMT2-205ENST00000553474 RBM4BQ9BQ04 359 aaKnown RBP12.58□□□□□ -0.39
SHMT2-205ENST00000553474 RBM4Q9BWF3 364 aaKnown RBP12.58□□□□□ -0.39
SHMT2-205ENST00000553474 ACPTQ9BZG2 426 aa12.58□□□□□ -0.39
SHMT2-205ENST00000553474 BRD9Q9H8M2 597 aa12.58□□□□□ -0.39
SHMT2-205ENST00000553474 ZFP14Q9HCL3 533 aa12.58□□□□□ -0.39
SHMT2-205ENST00000553474 ASAH2Q9NR71 780 aa12.58□□□□□ -0.39
SHMT2-205ENST00000553474 FARSBQ9NSD9 589 aaKnown RBP12.58□□□□□ -0.39
SHMT2-205ENST00000553474 DCAF13Q9NV06 445 aaKnown RBP12.58□□□□□ -0.39
SHMT2-205ENST00000553474 MYO7AQ13402 2215 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 MTCL1Q9Y4B5 1905 aaKnown RBP12.58□□□□□ -0.4
SHMT2-205ENST00000553474 PLXNA2O75051 1894 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 SNAP29O95721 258 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 PDYNP01213 254 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 FTH1P02794 183 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 EPORP19235 508 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 LHCGRP22888 699 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 TRPC1P48995 793 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 C21orf58P58505 322 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 PCDH1Q08174 1060 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 CSTF3Q12996 717 aaKnown RBP12.58□□□□□ -0.4
SHMT2-205ENST00000553474 TUBA3CQ13748 450 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 SUSD1Q6UWL2 747 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 RASGRP3Q8IV61 690 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 RAVER1Q8IY67 606 aaKnown RBP12.58□□□□□ -0.4
SHMT2-205ENST00000553474 CLEC4FQ8N1N0 589 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 PGBD3Q8N328 593 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 ASZ1Q8WWH4 475 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 ATL1Q8WXF7 558 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 AUTS2Q8WXX7 1259 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 SLC47A1Q96FL8 570 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 REXO5Q96IC2 774 aaKnown RBP12.58□□□□□ -0.4
SHMT2-205ENST00000553474 FBXL20Q96IG2 436 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 FCRL1Q96LA6 429 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 PAIP1Q9H074 479 aaKnown RBP12.58□□□□□ -0.4
SHMT2-205ENST00000553474 DNAJC11Q9NVH1 559 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 SLC25A37Q9NYZ2 338 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 CIDEBQ9UHD4 219 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 TSR3Q9UJK0 312 aaKnown RBP12.58□□□□□ -0.4
SHMT2-205ENST00000553474 C3orf18Q9UK00 162 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 BLOC1S6Q9UL45 172 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 CDH7Q9ULB5 785 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 CLEC4EQ9ULY5 219 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 USP22Q9UPT9 525 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 AP1M2Q9Y6Q5 423 aa12.58□□□□□ -0.4
SHMT2-205ENST00000553474 CHD7Q9P2D1 2997 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 A0A1W2PPC1 479 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 PER2O15055 1255 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 DNAJB5O75953 348 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 CPNE6O95741 557 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 CST1P01037 141 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 C1SP09871 688 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 HSD3B1P14060 373 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 JUPP14923 745 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 PRPS1L1P21108 318 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 HSD3B2P26439 372 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 DCKP27707 260 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 RECQLP46063 649 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 VASPP50552 380 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 SRSF11Q05519 484 aaKnown RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 IL18R1Q13478 541 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 CPSF6Q16630 551 aaKnown RBP eCLIP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 PYCR3Q53H96 274 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 FRG2Q64ET8 278 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 ELMSAN1Q6PJG2 1045 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 GDPD4Q6W3E5 623 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 DPY19L3Q6ZPD9 716 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 SERPINA11Q86U17 422 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 GPR180Q86V85 440 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 MSRB3Q8IXL7 192 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 KLHDC8AQ8IYD2 350 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 CMTM8Q8IZV2 173 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 C8orf59Q8N0T1 100 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 ZCCHC7Q8N3Z6 543 aaKnown RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 HCAR2Q8TDS4 363 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 FAM162AQ96A26 154 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 FBXL8Q96CD0 374 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 FAM120BQ96EK7 910 aaKnown RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 LRIG1Q96JA1 1093 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 RPL10LQ96L21 214 aaKnown RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 FRG2BQ96QU4 278 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 CPPED1Q9BRF8 314 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 NPLQ9BXD5 320 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-205ENST00000553474 PIF1Q9H611 641 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 SERHLQ9NQF3 203 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 HPS4Q9NQG7 708 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 LIMD1Q9UGP4 676 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 PCDHB14Q9Y5E9 798 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 CDH23Q9H251 3354 aa12.57□□□□□ -0.4
SHMT2-205ENST00000553474 A0A1W2PRU2 124 aa12.56□□□□□ -0.4
SHMT2-205ENST00000553474 TSPAN11A1L157 253 aa12.56□□□□□ -0.4
SHMT2-205ENST00000553474 ANKRD33BA6NCL7 494 aa12.56□□□□□ -0.4
SHMT2-205ENST00000553474 CREG1O75629 220 aa12.56□□□□□ -0.4
SHMT2-205ENST00000553474 C8AP07357 584 aa12.56□□□□□ -0.4
SHMT2-205ENST00000553474 PABPC1P11940 636 aaKnown RBP12.56□□□□□ -0.4
SHMT2-205ENST00000553474 JUNBP17275 347 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-205ENST00000553474 HOXB9P17482 250 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-205ENST00000553474 NELFEP18615 380 aaKnown RBP12.56□□□□□ -0.4
SHMT2-205ENST00000553474 PCSK6P29122 969 aa12.56□□□□□ -0.4
SHMT2-205ENST00000553474 STK19P49842 368 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms