RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RAI2Q9Y5P3 530 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 PRSS21Q9Y6M0 314 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ZFP37Q9Y6Q3 630 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 MICAL3Q7RTP6 2002 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 FAM220BPB1ANY3 271 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 LOC730098B7Z3J9 87 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 hCG_2039718K7EN88 272 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 PFDN6O15212 129 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SEC22BO75396 215 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 WBP4O75554 376 aaKnown RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 KCNK2O95069 426 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SEC24AO95486 1093 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 VNN2O95498 520 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 CD160O95971 181 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 OTCP00480 354 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 NTRK1P04629 796 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 BCKDHAP12694 445 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 IL1RNP18510 177 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 MAGP20916 626 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GRK5P34947 590 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GRK3P35626 688 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 KRT20P35900 424 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 LIPAP38571 399 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 EIF2DP41214 584 aaKnown RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 MAGEA2P43356 314 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 MAPKAPK2P49137 400 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 CLCN4P51793 760 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 NKX2-5P52952 324 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 VLDLRP98155 873 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 MVKQ03426 396 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 IRF5Q13568 498 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GTF2H3Q13889 308 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SF3B4Q15427 424 aaKnown RBP eCLIP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SYT16Q17RD7 645 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SOWAHCQ53LP3 525 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 FAM171A1Q5VUB5 890 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 KDM4DQ6B0I6 523 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SHQ1Q6PI26 577 aaKnown RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 LINGO4Q6UY18 593 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 Q6ZPB1 254 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 LRRC8DQ7L1W4 858 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 VTCN1Q7Z7D3 282 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ADCK1Q86TW2 530 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 HIPK1Q86Z02 1210 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GALNT13Q8IUC8 556 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ZDHHC21Q8IVQ6 265 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GLB1L3Q8NCI6 653 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 FAM83FQ8NEG4 500 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 PSMA8Q8TAA3 256 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 APH1BQ8WW43 257 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 HTRA1Q92743 480 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 EFHD2Q96C19 240 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 EGLN2Q96KS0 407 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 C8orf48Q96LL4 319 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SIGLEC11Q96RL6 698 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ZBTB18Q99592 522 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 KATNAL1Q9BW62 490 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 CINPQ9BW66 212 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ABCG8Q9H221 673 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 DSN1Q9H410 356 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 FBXO44Q9H4M3 255 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ZBTB20Q9HC78 741 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ABCB10Q9NRK6 738 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 RASSF1Q9NS23 344 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 QPCTLQ9NXS2 382 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GPRC5BQ9NZH0 403 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 OSGIN1Q9UJX0 560 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF490Q9ULM2 529 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 PPT2Q9UMR5 302 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 VPS4AQ9UN37 437 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 SLC45A1Q9Y2W3 748 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 PRG3Q9Y2Y8 225 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 TSC22D4Q9Y3Q8 395 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 TNPO3Q9Y5L0 923 aaKnown RBP5.29□□□□□ -1.56
LIMA1-212ENST00000552491 ORC6Q9Y5N6 252 aa5.29□□□□□ -1.56
LIMA1-212ENST00000552491 GAPDHSO14556 408 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 STX7O15400 261 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 PCDHGA12O60330 932 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 OAZ2O95190 189 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ESR1P03372 595 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 IL6P05231 212 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ALPIP09923 528 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 EPORP19235 508 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 THPOP40225 353 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GNPDA1P46926 289 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ALDH7A1P49419 539 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ARPP19P56211 112 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 HUNKP57058 714 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CXCR4P61073 352 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CREMQ03060 361 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 MAD2L1BPQ15013 274 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GPR162Q16538 588 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ZXDCQ2QGD7 858 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SMU1Q2TAY7 513 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 COLEC12Q5KU26 742 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 LRIF1Q5T3J3 769 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 DEPDC1Q5TB30 811 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ATG9BQ674R7 924 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RSPO2Q6UXX9 243 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 AHSA2Q719I0 299 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms