RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 XIRP1Q702N8 1843 aaKnown RBP15.89■□□□□ 0.13
CUX1-213ENST00000549414 ADAMTS4O75173 837 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 RASGRP1O95267 797 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 ZNF10P21506 573 aaPredicted RBP15.89■□□□□ 0.13
CUX1-213ENST00000549414 FOXA1P55317 472 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 PSMA8Q8TAA3 256 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 ABCG4Q9H172 646 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 MAGEE1Q9HCI5 957 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 FAM25AB3EWG3 89 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 FAM25CB3EWG5 89 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 FAM25GB3EWG6 89 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 VIPR1P32241 457 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 NTHL1P78549 312 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 SEMA3AQ14563 771 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 BHLHB9Q6PI77 547 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 THOC6Q86W42 341 aaKnown RBP15.89■□□□□ 0.13
CUX1-213ENST00000549414 DEPDC4Q8N2C3 294 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 RHEBL1Q8TAI7 183 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 FAM110BQ8TC76 370 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 RANBP9Q96S59 729 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 DNAJB9Q9UBS3 223 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 EFCAB10A6NFE3 127 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ARHGEF9O43307 516 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 PI15O43692 258 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 DFNA5O60443 496 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 PRPS1L1P21108 318 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 GSTM5P46439 218 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 CDK9P50750 372 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 IRF5Q13568 498 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ZCCHC10Q8TBK6 192 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 SLC9A6Q92581 669 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 MYDGFQ969H8 173 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 DPEP2Q9H4A9 486 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 PLAGL1Q9UM63 463 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RWDD3Q9Y3V2 267 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ZNF780BQ9Y6R6 833 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 TRIM24O15164 1050 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ERN1O75460 977 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 ARSAP15289 507 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 GABRB3P28472 473 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 AP1S2P56377 157 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 MADCAM1Q13477 382 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 DAG1Q14118 895 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 BEND5Q7L4P6 421 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 SLC15A3Q8IY34 581 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 BADQ92934 168 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 SLC45A3Q96JT2 553 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 NODALQ96S42 347 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ZSCAN5AQ9BUG6 496 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 LIN28AQ9H9Z2 209 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 PDE10AQ9Y233 779 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 LAMB2P55268 1798 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 PRORSD1PA6NEY8 169 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RSL1D1O76021 490 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 BMP10O95393 424 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 IFNGR2P38484 337 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 MS4A2Q01362 244 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 EMX2Q04743 252 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ATP13A5Q4VNC0 1218 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 ARMCX4Q5H9R4 360 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 OGFOD2Q6N063 350 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 CYP4V2Q6ZWL3 525 aaPredicted RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 ERMP1Q7Z2K6 904 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 TMEM25Q86YD3 366 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RERGQ96A58 199 aaPredicted RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 ZNF382Q96SR6 550 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 TRIT1Q9H3H1 467 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 TRIM43BA6NCK2 446 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RHOP08100 348 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 TIE1P35590 1138 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 CLCNKAP51800 687 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RGS1Q08116 209 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 EIF2B5Q13144 721 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 ABRAXAS2Q15018 415 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 HLA-DQA1Q5Y7H0 255 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 AHI1Q8N157 1196 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 TTC29Q8NA56 475 aaPredicted RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 FUBP1Q96AE4 644 aaKnown RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 RNFT2Q96EX2 444 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 LRCH3Q96II8 777 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RIPOR3Q96MK2 946 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 MEAF6Q9HAF1 191 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 SEMA3GQ9NS98 782 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 IFT80Q9P2H3 777 aaPredicted RBP15.88■□□□□ 0.13
CUX1-213ENST00000549414 ERGIC3Q9Y282 383 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 RREB1Q92766 1687 aa15.88■□□□□ 0.13
CUX1-213ENST00000549414 H3BSA7 217 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 IFNW1P05000 195 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 KLK1P06870 262 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 CHRM5P08912 532 aaPredicted RBP15.87■□□□□ 0.13
CUX1-213ENST00000549414 CDH1P12830 882 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 PRDX3P30048 256 aaKnown RBP15.87■□□□□ 0.13
CUX1-213ENST00000549414 HMGCLP35914 325 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 SLC34A3Q8N130 599 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 OR13J1Q8NGT2 312 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 PIH1D2Q8WWB5 315 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 OVCA2Q8WZ82 227 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 PIPSLA2A3N6 862 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 AP3D1O14617 1153 aa15.87■□□□□ 0.13
CUX1-213ENST00000549414 TSPAN6O43657 245 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms