RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RPS10P46783 165 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 CPSF6Q16630 551 aaKnown RBP eCLIP8.58□□□□□ -1.04
YBX3-208ENST00000540447 CPTPQ5TA50 214 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZNF438Q7Z4V0 828 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 DPP9Q86TI2 863 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MRPL41Q8IXM3 137 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 LIX1Q8N485 282 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SAMD12Q8N8I0 201 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 HJURPQ8NCD3 748 aaPredicted RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 GLIS3Q8NEA6 775 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 FCAMRQ8WWV6 532 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 NKD2Q969F2 451 aaPredicted RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 CACNG6Q9BXT2 260 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 HSD3B7Q9H2F3 369 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 RNF146Q9NTX7 359 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SEC14L3Q9UDX4 400 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 GMEB2Q9UKD1 530 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 OVOS2A0A0J9YW53 1432 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 OVOS2Q6IE36 1432 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 FAM234BA2RU67 622 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 RIIAD1A6NNX1 92 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SMIM22K7EJ46 135 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 K7EPK0 472 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZBTB14O43829 449 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 S100A8P05109 93 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ASMTP46597 345 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TGM4P49221 684 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 GPR19Q15760 415 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 FAM71E2Q8N5Q1 922 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZNF565Q8N9K5 539 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ANGPTL6Q8NI99 470 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 NKD1Q969G9 470 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SLC45A3Q96JT2 553 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 DPYSL5Q9BPU6 564 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 LGR4Q9BXB1 951 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SLAMF7Q9NQ25 335 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SH2B3Q9UQQ2 575 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 NRXN1Q9ULB1 1477 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 CDC7O00311 574 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MSI1O43347 362 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 SUPT20HL2P0C7V6 817 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MAPTP10636 758 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 XKP51811 444 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZNF616Q08AN1 781 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZNF460Q14592 562 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 AMHR2Q16671 573 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SUPT20HL1Q3ZLR7 823 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 RTL4Q6ZR62 310 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 C15orf52Q6ZUT6 534 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 DENND1CQ8IV53 801 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.58□□□□□ -1.04
YBX3-208ENST00000540447 LRRN4Q8WUT4 740 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TXNDC15Q96J42 360 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 KXD1Q9BQD3 176 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TTYH3Q9C0H2 523 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MTFR1LQ9H019 292 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 GSKIPQ9P0R6 139 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ABCD2Q9UBJ2 740 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TSPAN16Q9UKR8 245 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 WDR45Q9Y484 360 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SCGB1D1O95968 90 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 HPRP00739 348 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 CBR1P16152 277 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 PCSK1P29120 753 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 RPS5P46782 204 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZNF143P52747 638 aaPredicted RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 GBE1Q04446 702 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MBTD1Q05BQ5 628 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SNTB2Q13425 540 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 GRM3Q14832 879 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MAP1SQ66K74 1059 aaPredicted RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 PDE12Q6L8Q7 609 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 HSDL2Q6YN16 418 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 PHF13Q86YI8 300 aaPredicted RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 AKR7LQ8NHP1 331 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 CASTOR1Q8WTX7 329 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TAAR8Q969N4 342 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SAMD11Q96NU1 681 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 A0A0G2JMP0 313 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TO15178 435 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 MYL3P08590 195 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SNRNP70P08621 437 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 YBX3P16989 372 aaKnown RBP eCLIP8.58□□□□□ -1.041e-6■■□□□ 12.5
YBX3-208ENST00000540447 CAPN3P20807 821 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 CA5AP35218 305 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 OR3A2P47893 321 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 RAB4BP61018 213 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SLC6A3Q01959 620 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 HNRNPDQ14103 355 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 BOP1Q14137 746 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 ERFEQ4G0M1 354 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 METTL3Q86U44 580 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 LZTR1Q8N653 840 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZBTB44Q8NCP5 570 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 OR4M2Q8NGB6 313 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 OR6Q1Q8NGQ2 317 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 S100A16Q96FQ6 103 aaKnown RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 ABCG4Q9H172 646 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 DZANK1Q9NVP4 752 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 TMEM248Q9NWD8 314 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms