RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 FGF21Q9NSA1 209 aa7.03□□□□□ -1.28
MSH6-209ENST00000538136 NSMCE4AQ9NXX6 385 aa7.03□□□□□ -1.28
MSH6-209ENST00000538136 IFT80Q9P2H3 777 aaPredicted RBP7.03□□□□□ -1.28
MSH6-209ENST00000538136 POLR3HQ9Y535 204 aaPredicted RBP7.03□□□□□ -1.28
MSH6-209ENST00000538136 PTGDR2Q9Y5Y4 395 aa7.03□□□□□ -1.28
MSH6-209ENST00000538136 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.03□□□□□ -1.284e-7■■□□□ 11.5
MSH6-209ENST00000538136 IGHV3-20A0A0C4DH32 117 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 SPTY2D1-AS1A0A0U1RR47 76 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 PLRG1O43660 514 aaKnown RBP7.02□□□□□ -1.28
MSH6-209ENST00000538136 NUAK1O60285 661 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 ULK1O75385 1050 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 PIAS2O75928 621 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 S1PR4O95977 384 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 CEACAM5P06731 702 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 RETP07949 1114 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 RBP1P09455 135 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 EPHA3P29320 983 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 CCL7P80098 99 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 CYP27C1Q4G0S4 372 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 DENND5AQ6IQ26 1287 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 KIAA0907Q7Z7F0 614 aaPredicted RBP7.02□□□□□ -1.28
MSH6-209ENST00000538136 ZC3HC1Q86WB0 502 aaKnown RBP7.02□□□□□ -1.28
MSH6-209ENST00000538136 ZNF683Q8IZ20 524 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 FAM71BQ8TC56 605 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 C1QTNF2Q9BXJ5 285 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 SOX17Q9H6I2 414 aaPredicted RBP7.02□□□□□ -1.28
MSH6-209ENST00000538136 PDE7BQ9NP56 450 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 CUEDC1Q9NWM3 386 aaPredicted RBP7.02□□□□□ -1.28
MSH6-209ENST00000538136 SPHK1Q9NYA1 384 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 TMEM9Q9P0T7 183 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 SERTAD3Q9UJW9 196 aa7.02□□□□□ -1.28
MSH6-209ENST00000538136 VWA8A3KMH1 1905 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 FAM221BA6H8Z2 402 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 NRP2O60462 931 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 SPAG6O75602 509 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 UBXN7O94888 489 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 HOXB3P14651 431 aaPredicted RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 HPGDP15428 266 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 EPORP19235 508 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 TCN2P20062 427 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 RPL34P49207 117 aaKnown RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 TP53BP2Q13625 1128 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 SETDB1Q15047 1291 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 NR0B2Q15466 257 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 HLA-DQA1Q5Y7H0 255 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ANKRD26P1Q6NSI1 321 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ZNF534Q76KX8 674 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 B3GNT8Q7Z7M8 397 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 TTC29Q8NA56 475 aaPredicted RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 KIAA1143Q96AT1 154 aaPredicted RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 SLC45A3Q96JT2 553 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 TRAPPC9Q96Q05 1148 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 MFRPQ9BY79 579 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 MRPL1Q9BYD6 325 aaKnown RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 ACSS3Q9H6R3 686 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ADAP2Q9NPF8 381 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.02□□□□□ -1.29
MSH6-209ENST00000538136 C6orf203Q9P0P8 240 aaPredicted RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 DMTF1Q9Y222 760 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ESPL1Q14674 2120 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 G3V3Y1 287 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 PYCARD-AS1I3L0S3 204 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 DYNC1I1O14576 645 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 PPM1DO15297 605 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 PEX11BO96011 259 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 CAPN1P07384 714 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 CHRNGP07510 517 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 SLC35G6P0C7Q6 338 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 CR2P20023 1033 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 NT5EP21589 574 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ITGA3P26006 1051 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ZNF844Q08AG5 666 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 FCRLBQ6BAA4 426 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 GCNT7Q6ZNI0 430 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 CATSPER2Q96P56 530 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 GABRG3Q99928 467 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 HDAC8Q9BY41 377 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 TSPAN10Q9H1Z9 355 aaPredicted RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 MRPL46Q9H2W6 279 aaKnown RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 L2HGDHQ9H9P8 463 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 RARRES3Q9UL19 164 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 FZD4Q9ULV1 537 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 PCDHB1Q9Y5F3 818 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 PCYT1BQ9Y5K3 369 aaPredicted RBP7.02□□□□□ -1.29
MSH6-209ENST00000538136 RALGAPA1Q6GYQ0 2036 aa7.02□□□□□ -1.29
MSH6-209ENST00000538136 ABCA12Q86UK0 2595 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 CDC14CA4D256 554 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 C9J4A7 227 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 AIM2O14862 343 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 CSO75390 466 aaKnown RBP7.01□□□□□ -1.29
MSH6-209ENST00000538136 GMNNO75496 209 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 STAMBPO95630 424 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 CCNYL3P0C7X3 344 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 POU3F3P20264 500 aaPredicted RBP7.01□□□□□ -1.29
MSH6-209ENST00000538136 CRABP2P29373 138 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 FOXN2P32314 431 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 TUBB4BP68371 445 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 RPE65Q16518 533 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 LRRC69Q6ZNQ3 347 aa7.01□□□□□ -1.29
MSH6-209ENST00000538136 POU5F2Q8N7G0 328 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms