RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	CXCR3	P49682	368 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	CLCN5	P51795	746 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	ART1	P52961	327 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	GFPT1	Q06210	699 aa	Predicted RBP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	HSPB3	Q12988	150 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	SGCG	Q13326	291 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	GAMT	Q14353	236 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	UGCG	Q16739	394 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	PNLIPRP3	Q17RR3	467 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	PRAMEF19	Q5SWL8	479 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	CES4A	Q5XG92	561 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	PLEKHA7	Q6IQ23	1121 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	SLC25A24	Q6NUK1	477 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	NEK5	Q6P3R8	708 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	PAPD4	Q6PIY7	484 aa	Known RBP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	FAM198B	Q6UWH4	519 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	RGS9BP	Q6ZS82	235 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	RBM43	Q6ZSC3	357 aa	Known RBP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	C1orf186	Q6ZWK4	172 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	DET1	Q7L5Y6	550 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	ARMC9	Q7Z3E5	817 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	PALB2	Q86YC2	1186 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	UNC5CL	Q8IV45	518 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	SIAH3	Q8IW03	269 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	ELMOD2	Q8IZ81	293 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	KDM8	Q8N371	416 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	ALG14	Q96F25	216 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	CDCA5	Q96FF9	252 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	MUS81	Q96NY9	551 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	ACOX2	Q99424	681 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	PKP2	Q99959	881 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	P2RY12	Q9H244	342 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	C6orf106	Q9H6K1	298 aa	Predicted RBP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	MINDY3	Q9H8M7	445 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	FANCF	Q9NPI8	374 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	AATF	Q9NY61	560 aa	Known RBP eCLIP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	SPG21	Q9NZD8	308 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	GMEB2	Q9UKD1	530 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	SRPRB	Q9Y5M8	271 aa	Known RBP	4.5	□□□□□ -1.69
ATM-223	ENST00000533979	ATP7A	Q04656	1500 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	DEPDC5	O75140	1603 aa		4.5	□□□□□ -1.69
ATM-223	ENST00000533979	FAM205A	Q6ZU69	1335 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	UNC13B	O14795	1591 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	MAST1	Q9Y2H9	1570 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	MYOM3	Q5VTT5	1437 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	C5orf51	A6NDU8	294 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	VCY	O14598	125 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	PTGES	O14684	152 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	MAP2K7	O14733	419 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	TTI1	O43156	1089 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	ATP2C2	O75185	946 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	NME6	O75414	186 aa	Predicted RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	KCNK5	O95279	499 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	PDGFB	P01127	241 aa	Predicted RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	C8orf89	P0DMQ9	161 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	CCDC192	P0DO97	292 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	NR2F2	P24468	414 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	ANP32A	P39687	249 aa	Known RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	WNT5A	P41221	380 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	PSMC4	P43686	418 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	IFNAR2	P48551	515 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	NUDT6	P53370	316 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	UCP2	P55851	309 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	TMPRSS3	P57727	454 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	KIF5A	Q12840	1032 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	OASL	Q15646	514 aa	Known RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	MAJIN	Q3KP22	176 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	ESCO2	Q56NI9	601 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	TXNRD3NB	Q6F5E7	133 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	CES5A	Q6NT32	575 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	PQLC2	Q6ZP29	291 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979		Q6ZTC4	211 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	LINGO2	Q7L985	606 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	TLK2	Q86UE8	772 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	EXOC3L1	Q86VI1	746 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	CCDC83	Q8IWF9	413 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	BEST2	Q8NFU1	509 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	OR52E1	Q8NGJ3	308 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	OR14A16	Q8NHC5	309 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	RNASE8	Q8TDE3	154 aa	Known RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	FAM216A	Q8WUB2	273 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	NSMAF	Q92636	917 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	TMEM186	Q96B77	213 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	RNF183	Q96D59	192 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	SNRNP40	Q96DI7	357 aa	Known RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	BSCL2	Q96G97	398 aa	Predicted RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	ABHD8	Q96I13	439 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	APOLD1	Q96LR9	279 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	GDAP1L1	Q96MZ0	367 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	SPATA13	Q96N96	652 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	DDO	Q99489	341 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	OLFM1	Q99784	485 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	SLX1A	Q9BQ83	275 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	PCGF1	Q9BSM1	259 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	NDRG3	Q9UGV2	375 aa		4.49	□□□□□ -1.69
ATM-223	ENST00000533979	TRMT6	Q9UJA5	497 aa	Known RBP	4.49	□□□□□ -1.69
ATM-223	ENST00000533979	ERVK-11	Q9UQG0	969 aa		4.49	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms