RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TPBGLP0DKB5 382 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 CTSEP14091 401 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 ITGB6P18564 788 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PDHA2P29803 388 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 RPA3P35244 121 aaPredicted RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 CTSKP43235 329 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 GNPDA1P46926 289 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 KCNC1P48547 511 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 DLG1Q12959 904 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 ABRQ12979 859 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 MAP7Q14244 749 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 CSHL1Q14406 222 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 NFE2L1Q14494 772 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 ZNF460Q14592 562 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 ELOCQ15369 112 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 SEPT7Q16181 437 aaKnown RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 TUBB8Q3ZCM7 444 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TRIM61Q5EBN2 209 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TCEAL6Q6IPX3 200 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TTC23LQ6PF05 361 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 IL27RAQ6UWB1 636 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 KDM7AQ6ZMT4 941 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 REC114Q7Z4M0 266 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 UBE3DQ7Z6J8 389 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PIM3Q86V86 326 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 NRROSQ86YC3 692 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 HID1Q8IV36 788 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 CPNE9Q8IYJ1 553 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 C4orf33Q8N1A6 199 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 MYO1HQ8N1T3 1032 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 FBXO15Q8NCQ5 510 aaPredicted RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 GIMAP7Q8NHV1 300 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 RDH11Q8TC12 318 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 LKAAEAR1Q8TD35 194 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 MAGEC3Q8TD91 643 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 MCOLN3Q8TDD5 553 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TCP10LQ8TDR4 215 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 NAT14Q8WUY8 206 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 KCTD4Q8WVF5 259 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TCEAL3Q969E4 200 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 ZBTB9Q96C00 473 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 FAM136AQ96C01 138 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 CCDC126Q96EE4 140 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 APOPT1Q96IL0 206 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 FOPNLQ96NB1 174 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 EDEM2Q9BV94 578 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 NUSAP1Q9BXS6 441 aaKnown RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 GSDMCQ9BYG8 508 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 IQCGQ9H095 443 aaKnown RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 TMEM168Q9H0V1 697 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 OR52A5Q9H2C5 316 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 CNOT10Q9H9A5 744 aaKnown RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 COG4Q9H9E3 785 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PARVBQ9HBI1 364 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 TM7SF3Q9NS93 570 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 RXFP3Q9NSD7 469 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PCMTD2Q9NV79 361 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 SPASTQ9UBP0 616 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PNMA8BQ9ULN7 279 aaPredicted RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 TMCO1Q9UM00 188 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PRKAB1Q9Y478 270 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 PCYT1BQ9Y5K3 369 aaPredicted RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 SLCO1B1Q9Y6L6 691 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 SPTBN2O15020 2390 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 ARHGEF17Q96PE2 2063 aaPredicted RBP7.21□□□□□ -1.26
CD44-228ENST00000528455 LRP4O75096 1905 aa7.21□□□□□ -1.26
CD44-228ENST00000528455 CNOT1A5YKK6 2376 aaKnown RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 NCOR2Q9Y618 2525 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 KNL1Q8NG31 2342 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 TMEM120BA0PK00 339 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 LNP1A1A4G5 178 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 C4orf47A7E2U8 309 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SYCE1LA8MT33 242 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 PATE3B3GLJ2 98 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 IFRD1O00458 451 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 KLK8O60259 260 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 PLIN3O60664 434 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SPAG7O75391 227 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 PSIP1O75475 530 aaKnown RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 RPN2P04844 631 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SYPP08247 313 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ENO2P09104 434 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 HIST1H2AGP0C0S8 130 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 DHRS4L1P0CG22 281 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 SLC2A4P14672 509 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 CPA3P15088 417 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 XRCC1P18887 633 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 TFEBP19484 476 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 TAC1P20366 129 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 HIST1H2ADP20671 130 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 NDUFS1P28331 727 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 HALP42357 657 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ETV4P43268 484 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 ARRB1P49407 418 aaPredicted RBP7.2□□□□□ -1.26
CD44-228ENST00000528455 PGGT1BP53609 377 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 PRKAA2P54646 552 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 NAA20P61599 178 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 IRX4P78413 519 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 CDKL1Q00532 357 aa7.2□□□□□ -1.26
CD44-228ENST00000528455 IRF9Q00978 393 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms