RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 PLPPR4Q7Z2D5 763 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 PM20D2Q8IYS1 436 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 SLC5A8Q8N695 610 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 GMCL1P1Q8NEA9 526 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 DMBX1Q8NFW5 382 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 OR52I2Q8NH67 350 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 ANP32BQ92688 251 aaKnown RBP5.55□□□□□ -1.52
PCF11-202ENST00000528336 SLC22A18Q96BI1 424 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 SAT2Q96F10 170 aaPredicted RBP5.55□□□□□ -1.52
PCF11-202ENST00000528336 LINGO1Q96FE5 620 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 FER1L6-AS2Q96M78 137 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 INPP4AQ96PE3 977 aaPredicted RBP5.55□□□□□ -1.52
PCF11-202ENST00000528336 NEURL2Q9BR09 285 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 APOL6Q9BWW8 343 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 RAD21L1Q9H4I0 556 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 VPS37BQ9H9H4 285 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 SERINC1Q9NRX5 453 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 AIPL1Q9NZN9 384 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 AKAP7Q9P0M2 348 aaPredicted RBP5.55□□□□□ -1.52
PCF11-202ENST00000528336 SUCLA2Q9P2R7 463 aaPredicted RBP5.55□□□□□ -1.52
PCF11-202ENST00000528336 DLGAP4Q9Y2H0 992 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 YTHDC2Q9H6S0 1430 aaKnown RBP5.55□□□□□ -1.52
PCF11-202ENST00000528336 NCOA3Q9Y6Q9 1424 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 TMEM94Q12767 1356 aa5.55□□□□□ -1.52
PCF11-202ENST00000528336 XRN1Q8IZH2 1706 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 KIAA1210Q9ULL0 1709 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 LRRC7Q96NW7 1537 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 IQSEC2Q5JU85 1478 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 RALGAPBQ86X10 1494 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 ZCWPW2A0A1B0GU75 182 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 A0A1W2PP11 408 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 A0A1W2PS18 150 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 CLRN2A0PK11 232 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 A4D1N5 150 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 CCDC169A6NNP5 214 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 TMEM178BH3BS89 294 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 UBXN8O00124 270 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 C22orf31O95567 290 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 CRYAAP02489 173 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 MTHFRP42898 656 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 CAPZA2P47755 286 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 IFNAR2P48551 515 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 RUNX1T1Q06455 604 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 RPA4Q13156 261 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 ITGA7Q13683 1181 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 ZRSR1Q15695 479 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 C9orf152Q5JTZ5 239 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 GLRA4Q5JXX5 417 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 RARS2Q5T160 578 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 CAVIN1Q6NZI2 390 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 RABEPKQ7Z6M1 372 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 SCYL3Q8IZE3 742 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 MRPL43Q8N983 215 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 SLC38A9Q8NBW4 561 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 TMEM255BQ8WV15 326 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 MR1Q95460 341 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 PHF21AQ96BD5 680 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 SIPA1Q96FS4 1042 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 ABHD1Q96SE0 405 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 MAK16Q9BXY0 300 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 HSD3B7Q9H2F3 369 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 ST6GALNAC4Q9H4F1 302 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 RPAP3Q9H6T3 665 aaPredicted RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 GIMAP4Q9NUV9 329 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 STK26Q9P289 416 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 CGNQ9P2M7 1197 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 SUN2Q9UH99 717 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 TSPYL4Q9UJ04 414 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 PIN4Q9Y237 131 aaKnown RBP5.54□□□□□ -1.52
PCF11-202ENST00000528336 FAM135BQ49AJ0 1406 aa5.54□□□□□ -1.52
PCF11-202ENST00000528336 CHD2O14647 1828 aaKnown RBP5.53□□□□□ -1.52
PCF11-202ENST00000528336 STRCP1A6NGW2 1772 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 TMEM189-UBE2V1I3L0A0 370 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 J3QR06 171 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 BMPR1BO00238 502 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 DVL1O14640 695 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 RIPK2O43353 540 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 LMX1BO60663 402 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 TSC22D2O75157 780 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 ZNF217O75362 1048 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 KIAA0754O94854 1291 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 IGLV2-11P01706 119 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 MYBL1P10243 752 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 NR2F2P24468 414 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 HOXA13P31271 388 aaPredicted RBP5.53□□□□□ -1.52
PCF11-202ENST00000528336 CASP3P42574 277 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 ACAA2P42765 397 aaKnown RBP5.53□□□□□ -1.52
PCF11-202ENST00000528336 ARCN1P48444 511 aaKnown RBP5.53□□□□□ -1.52
PCF11-202ENST00000528336 DVL1P1P54792 670 aaPredicted RBP5.53□□□□□ -1.52
PCF11-202ENST00000528336 MFAP4P55083 255 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 MAP2K1Q02750 393 aaPredicted RBP5.53□□□□□ -1.52
PCF11-202ENST00000528336 SPOCK1Q08629 439 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 UBE2V1Q13404 147 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 PCLAFQ15004 111 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 DLG2Q15700 870 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 NTRK2Q16620 822 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 MEP1AQ16819 746 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 MEP1BQ16820 701 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 ZNF852Q6ZMS4 543 aa5.53□□□□□ -1.52
PCF11-202ENST00000528336 MEX3BQ6ZN04 569 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms