RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 DTWD1Q8N5C7 304 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 OR2L8Q8NGY9 312 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 COG1Q8WTW3 980 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 FAR1Q8WVX9 515 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 SLC22A18Q96BI1 424 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 TMEM121Q9BTD3 319 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 LHPPQ9H008 270 aa22.58■■□□□ 1.21
CPSF1-202ENST00000527827 CAMSAP3Q9P1Y5 1249 aaPredicted RBP22.58■■□□□ 1.21
CPSF1-202ENST00000527827 EPN1Q9Y6I3 576 aaPredicted RBP22.58■■□□□ 1.21
CPSF1-202ENST00000527827 GRID2IPA4D2P6 1211 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 S1PR4O95977 384 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 EDN3P14138 238 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 TNFRSF8P28908 595 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 OR1D4P47884 311 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 KLF1Q13351 362 aaPredicted RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 SEMA3AQ14563 771 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 GRM7Q14831 915 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 ZC3H12BQ5HYM0 836 aaKnown RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 TCTE1Q5JU00 501 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 YOD1Q5VVQ6 348 aaPredicted RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 B3GNTL1Q67FW5 361 aaPredicted RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 ZNF534Q76KX8 674 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 LINC00523Q86TU6 105 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 DCUN1D3Q8IWE4 304 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 OR11G2Q8NGC1 345 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 CFAP61Q8NHU2 1237 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 SLC35B2Q8TB61 432 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 CNDP1Q96KN2 507 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 ZNF778Q96MU6 729 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 MESP1Q9BRJ9 268 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 LACRTQ9GZZ8 138 aa22.57■■□□□ 1.2
CPSF1-202ENST00000527827 INTS7Q9NVH2 962 aaKnown RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 NXT1Q9UKK6 140 aaKnown RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 REXO2Q9Y3B8 237 aaKnown RBP22.57■■□□□ 1.2
CPSF1-202ENST00000527827 TEP1Q99973 2627 aaKnown RBP22.56■■□□□ 1.2
CPSF1-202ENST00000527827 GOLGA6L9A6NEM1 432 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 SOWAHDA6NJG2 315 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 VSTM2BA6NLU5 285 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 IQCF5A8MTL0 148 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 BTNL10A8MVZ5 291 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 PRICKLE3O43900 615 aaPredicted RBP22.56■■□□□ 1.2
CPSF1-202ENST00000527827 CDH17Q12864 832 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 CDC16Q13042 620 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 ZRSR2Q15696 482 aaKnown RBP22.56■■□□□ 1.2
CPSF1-202ENST00000527827 RBBP7Q16576 425 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 IRAK1BP1Q5VVH5 260 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 AFTPHQ6ULP2 937 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 UNC5DQ6UXZ4 953 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 SLC34A3Q8N130 599 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 METTL27Q8N6F8 245 aaPredicted RBP22.56■■□□□ 1.2
CPSF1-202ENST00000527827 ASZ1Q8WWH4 475 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 THOC3Q96J01 351 aaKnown RBP22.56■■□□□ 1.2
CPSF1-202ENST00000527827 CARD6Q9BX69 1037 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 EPS8L2Q9H6S3 715 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 SEMA3GQ9NS98 782 aa22.56■■□□□ 1.2
CPSF1-202ENST00000527827 HEATR9A2RTY3 570 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 FITM1A5D6W6 292 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 F8W8V4 182 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 RASGRF2O14827 1237 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 CTSVO60911 334 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 MED26O95402 600 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 RPN2P04844 631 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 PTMSP20962 102 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 PER3P56645 1201 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 ACVR1Q04771 509 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 TLR1Q15399 786 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 SF1Q15637 639 aaKnown RBP22.55■■□□□ 1.2
CPSF1-202ENST00000527827 TSTD2Q5T7W7 516 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 SRRM1Q8IYB3 904 aaKnown RBP22.55■■□□□ 1.2
CPSF1-202ENST00000527827 DNAAF3Q8N9W5 541 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 TTC29Q8NA56 475 aaPredicted RBP22.55■■□□□ 1.2
CPSF1-202ENST00000527827 TTC1Q99614 292 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 SELENOSQ9BQE4 189 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 RIMKLBQ9ULI2 386 aa22.55■■□□□ 1.2
CPSF1-202ENST00000527827 TCRBV7S2A1N4TA0A589 114 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 KLHL18O94889 574 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 SLCO2B1O94956 709 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 KRT222Q8N1A0 295 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 CATSPER1Q8NEC5 780 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 OR4L1Q8NH43 312 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 SLX1AQ9BQ83 275 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 IL1RAPL1Q9NZN1 696 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 PACSIN2Q9UNF0 486 aaPredicted RBP22.54■■□□□ 1.2
CPSF1-202ENST00000527827 MAU2Q9Y6X3 613 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 CSMD1Q96PZ7 3565 aa22.54■■□□□ 1.2
CPSF1-202ENST00000527827 ERI2A8K979 691 aaKnown RBP22.53■■□□□ 1.2
CPSF1-202ENST00000527827 ZG16O60844 167 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 PTMAP06454 111 aaKnown RBP22.53■■□□□ 1.2
CPSF1-202ENST00000527827 APOA4P06727 396 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 AOAHP28039 575 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 GRIA1P42261 906 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 VSX2P58304 361 aaPredicted RBP22.53■■□□□ 1.2
CPSF1-202ENST00000527827 MFAP5Q13361 173 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 FAM214AQ32MH5 1076 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 WASHC2DQ5SRD0 308 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 FRMPD2BQ6IN97 320 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 ISLR2Q6UXK2 745 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 LINC00696Q6ZRV3 163 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 OR6P1Q8NGX9 317 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 ZUFSPQ96AP4 578 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms