RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CRTAC1Q9NQ79 661 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 MRPS33Q9Y291 106 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 STON1Q9Y6Q2 735 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 ARFGEF1Q9Y6D6 1849 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 RSL1D1O76021 490 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 SAGP10523 405 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 CD36P16671 472 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 KELP23276 732 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 HSPB3Q12988 150 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 TYSND1Q2T9J0 566 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 PLPP4Q5VZY2 271 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 BORAQ6PGQ7 559 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 LYSMD3Q7Z3D4 306 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 DPF3Q92784 378 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 KCNN1Q92952 543 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 TAMM41Q96BW9 452 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 KLHL31Q9H511 634 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 VPS29Q9UBQ0 182 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 RIMS3Q9UJD0 308 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 SCML2Q9UQR0 700 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 GTPBP1O00178 669 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 TIE1P35590 1138 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 CSKP41240 450 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 SERINC3Q13530 473 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 ATP6AP1Q15904 470 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 DEFB115Q30KQ5 88 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 FAM98AQ8NCA5 519 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 SMG8Q8ND04 991 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 SLC45A3Q96JT2 553 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 TUBA1CQ9BQE3 449 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 CCSER2Q9H7U1 834 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 PSIP1O75475 530 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 DNAJA1P31689 397 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 GGT5P36269 586 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 USP30Q70CQ3 517 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 SLC9A6Q92581 669 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 BIRC7Q96CA5 298 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 C11orf24Q96F05 449 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 TMEM74Q96NL1 305 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 S100A13Q99584 98 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 POPDC3Q9HBV1 291 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 ZDHHC3Q9NYG2 299 aa13.51□□□□□ -0.25
SYNPO-205ENST00000522122 OAS3Q9Y6K5 1087 aaKnown RBP13.51□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3DA0A087WVF3 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3IA0A087WXS9 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3EA0A087X179 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3KA0A087X1G2 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3FA6NER0 549 aaPredicted RBP13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3LB9A6J9 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 CCL16O15467 120 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBX1O43435 398 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3HP0C7X1 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 S100A1P23297 94 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 MS4A2Q01362 244 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 RHAGQ02094 409 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 MXD1Q05195 221 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3GQ6DHY5 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3CQ6IPX1 549 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TBC1D3Q8IZP1 549 aaPredicted RBP13.5□□□□□ -0.25
SYNPO-205ENST00000522122 OR4F6Q8NGB9 312 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 STON2Q8WXE9 905 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 ZBED3Q96IU2 234 aaPredicted RBP13.5□□□□□ -0.25
SYNPO-205ENST00000522122 FCRL4Q96PJ5 515 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 MCUBQ9NWR8 336 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 COMMD9Q9P000 198 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 A0A1B0GVG6 124 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 SNX4O95219 450 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 LEPRP48357 1165 aaKnown RBP13.5□□□□□ -0.25
SYNPO-205ENST00000522122 HNMTP50135 292 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 KCNQ1P51787 676 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 PLEKHG6Q3KR16 790 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 OR2T5Q6IEZ7 315 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TRNP1Q6NT89 227 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 NIPAL1Q6NVV3 410 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 BEND5Q7L4P6 421 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 OR2T29Q8NH02 315 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 PIK3R3Q92569 461 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 PPP1R14AQ96A00 147 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 RBMX2Q9Y388 322 aaKnown RBP13.5□□□□□ -0.25
SYNPO-205ENST00000522122 IRAK3Q9Y616 596 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 ABHD14A-ACY1A0A1B0GW23 586 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 ARHGEF33A8MVX0 844 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 OR1F1O43749 312 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 F2P00734 622 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 EPOP01588 193 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 ALPIP09923 528 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 CD247P20963 164 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TAF13Q15543 124 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 CCL14Q16627 93 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 SYT16Q17RD7 645 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 C5orf22Q49AR2 442 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 FRG2Q64ET8 278 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 PARGQ86W56 976 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 TSPEARQ8WU66 669 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 BRI3BPQ8WY22 251 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 RFKQ969G6 155 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 ART5Q96L15 291 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 FRG2BQ96QU4 278 aa13.5□□□□□ -0.25
SYNPO-205ENST00000522122 ANKRD60Q9BZ19 345 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms