RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZNF436Q9C0F3 470 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 RPF2Q9H7B2 306 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 FBXO10Q9UK96 956 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PBRM1Q86U86 1689 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CEP170Q5SW79 1584 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 AGPSO00116 658 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 GMDSO60547 372 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SNAP29O95721 258 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ETV1P50549 477 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 YBEYP58557 167 aaPredicted RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 RELAQ04206 551 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 EN1Q05925 392 aaPredicted RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 ABHD18Q0P651 414 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SMARCB1Q12824 385 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 PRPF38BQ5VTL8 546 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 TXNRD3Q86VQ6 643 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF781Q8N8C0 355 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 DEDD2Q8WXF8 326 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 GNG8Q9UK08 70 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 MGAT4BQ9UQ53 548 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 FUOMA2VDF0 154 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF705FA8MVS1 300 aaPredicted RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 KRBOX1C9JBD0 128 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 CHRNA1P02708 482 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF705DP0CH99 300 aaPredicted RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF705BP0CI00 300 aaPredicted RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 BCKDHAP12694 445 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ATP5A1P25705 553 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 PTPN6P29350 595 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 HLCSP50747 726 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 GTF2BQ00403 316 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SP140Q13342 867 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 FASTKD3Q14CZ7 662 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 RNF180Q86T96 592 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 P2RY11Q96G91 374 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC35G5Q96KT7 338 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 B3GNT4Q9C0J1 378 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 TFB2MQ9H5Q4 396 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 KLK14Q9P0G3 267 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ROBO3Q96MS0 1386 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 CLDN4O14493 209 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC7A4O43246 635 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SH3BGRLO75368 114 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 LATS1O95835 1130 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 H1F0P07305 194 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 MC4RP32245 332 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 HACD4Q5VWC8 232 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 BEST3Q8N1M1 668 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 OR52J3Q8NH60 311 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 CANT1Q8WVQ1 401 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SUSD6Q92537 303 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SPACA7Q96KW9 195 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 MRI1Q9BV20 369 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 DPCDQ9BVM2 203 aaPredicted RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 ASPNQ9BXN1 380 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 MTFR1LQ9H019 292 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 OR51V1Q9H2C8 321 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 PPIL3Q9H2H8 161 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 CPSF4LA6NMK7 179 aaKnown RBP11□□□□□ -0.65
LIMCH1-217ENST00000512946 J3QR89 54 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 TSPAN3O60637 253 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ESR1P03372 595 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 CRADDP78560 199 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 CACNG1Q06432 222 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SULT2A1Q06520 285 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 HMGN3Q15651 99 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 GLT8D1Q68CQ7 371 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 LRRC66Q68CR7 880 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 GID4Q8IVV7 300 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 POGLUT1Q8NBL1 392 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 LRRC58Q96CX6 371 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 CDC6Q99741 560 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 SMURF1Q9HCE7 757 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 MGAT4CQ9UBM8 478 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF510Q9Y2H8 683 aa11□□□□□ -0.65
LIMCH1-217ENST00000512946 hCG_2039718K7EN88 272 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 K7EPI3 171 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SCAMP3O14828 347 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 DENRO43583 198 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ATG12O94817 140 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CKMT2P17540 419 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 AMD1P17707 334 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 TSPAN8P19075 237 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CDK2P24941 298 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 HTR1BP28222 390 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 TGFB2P61812 414 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 TOMM20Q15388 145 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 FIP1L1Q6UN15 594 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 TMED4Q7Z7H5 227 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ZBTB2Q8N680 514 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CPT1BQ92523 772 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SLCO2A1Q92959 643 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 JCADQ9P266 1359 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SOBPA7XYQ1 873 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 RFPL3O75679 317 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 NDST3O95803 873 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CSTBP04080 98 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ALPPP05187 535 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 EDNRAP25101 427 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 RFTN1Q14699 578 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms