RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MAP1SQ66K74 1059 aaPredicted RBP11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 ARHGAP17Q68EM7 881 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 NADSYN1Q6IA69 706 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 NUDT8Q8WV74 236 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 RHOJQ9H4E5 214 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 ZCCHC4Q9H5U6 513 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 SETD4Q9NVD3 440 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 MAPRE3Q9UPY8 281 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 DNAJC15Q9Y5T4 150 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 ADGRA2Q96PE1 1338 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 SLIT2O94813 1529 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 TAF1P21675 1872 aa11.77□□□□□ -0.52
LIMCH1-213ENST00000511496 TRBV23-1A0A0A0MS06 115 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A0A6YYJ9 748 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 IGKV6D-41A0A0C4DH26 115 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A1W2PPL8 197 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 KHNYNO15037 678 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 FABP1P07148 127 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 DARSP14868 501 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ARSBP15848 533 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 PTX3P26022 381 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ATP4BP51164 291 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ATXN1P54253 815 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 FOXA1P55317 472 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 HERVK_113P63132 956 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 C21orf62-AS1Q17RA5 79 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ADGRD2Q7Z7M1 963 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 MICALL2Q8IY33 904 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 C19orf18Q8NEA5 215 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 RBCK1Q9BYM8 510 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 SDHAF2Q9NX18 166 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 TAS2R16Q9NYV7 291 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 SESN1Q9Y6P5 492 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ASPDHA6ND91 283 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 CBX7O95931 251 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 APOC3P02656 99 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 STSP08842 583 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 LBPP18428 481 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ZP3P21754 424 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 FOXM1Q08050 763 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 PLD1Q13393 1074 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 METTL11BQ5VVY1 283 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 TFAP2EQ6VUC0 442 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 STPG2Q8N412 459 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 PNPLA1Q8N8W4 532 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 P2RY11Q96G91 374 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ASPNQ9BXN1 380 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ARNT2Q9HBZ2 717 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 MID1IP1Q9NPA3 183 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 SMPD4Q9NXE4 827 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 NSMCE4AQ9NXX6 385 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 KLHL8Q9P2G9 620 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 ADAM30Q9UKF2 790 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 KCNMB2Q9Y691 235 aa11.77□□□□□ -0.53
LIMCH1-213ENST00000511496 LOC102723532A0A0G2JNH3 316 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC22A23A1A5C7 686 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 M0QYV0 167 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SIGLEC5O15389 551 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SGCEO43556 437 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 VIPP01282 170 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 RPS19P39019 145 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 PTGER2P43116 358 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 MAP2K3P46734 347 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 MAN2A2P49641 1150 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 KCNQ1P51787 676 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CXCR4P61073 352 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SIGLEC14Q08ET2 396 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ELP6Q0PNE2 266 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SP140Q13342 867 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 GRAPQ13588 217 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 RFX4Q33E94 735 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ATRAIDQ6UW56 229 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 PIAS4Q8N2W9 510 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 RYBPQ8N488 228 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CLRN3Q8NCR9 226 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ZFPM2Q8WW38 1151 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SGK3Q96BR1 496 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 AP2M1Q96CW1 435 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 QKIQ96PU8 341 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 THUMPD3Q9BV44 507 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 ESRP2Q9H6T0 727 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 LDAHQ9H6V9 325 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CBX4O00257 560 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 LZTS3O60299 673 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 PCDHGA12O60330 932 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 HPGDSO60760 199 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 MAFO75444 373 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 RHOBTB1O94844 696 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 DIRAS1O95057 198 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 LDOC1O95751 146 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 STAU1O95793 577 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 PTHP01270 115 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 TPOP07202 933 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 POU4F1Q01851 419 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 CSTF1Q05048 431 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 FCN2Q15485 313 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 SGCAQ16586 387 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 TSTQ16762 297 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 Q3ZCU0 254 aa11.76□□□□□ -0.53
LIMCH1-213ENST00000511496 PDSS1Q5T2R2 415 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms