RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PHF1O43189 567 aaPredicted RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 CEACAM4O75871 244 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 HSPA1AP0DMV8 641 aaKnown RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 HSPA1BP0DMV9 641 aaKnown RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 CSTF2P33240 577 aaKnown RBP eCLIP2.1□□□□□ -2.07
NUP54-208ENST00000508604 CAMPP49913 170 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 PRAMEP78395 509 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 BIRC3Q13489 604 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 HERC3Q15034 1050 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 FAM98BQ52LJ0 330 aaKnown RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 PHLDA2Q53GA4 152 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 NCEH1Q6PIU2 408 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 RNF130Q86XS8 419 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 MCEMP1Q8IX19 187 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 SMC5Q8IY18 1101 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 ESX1Q8N693 406 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 PERPQ96FX8 193 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 NAP1L5Q96NT1 182 aaPredicted RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 SDHCQ99643 169 aaPredicted RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 ADNPQ9H2P0 1102 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 MTHFD2LQ9H903 347 aaPredicted RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 PPCSQ9HAB8 311 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 SERINC1Q9NRX5 453 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 WSB2Q9NYS7 404 aaPredicted RBP2.1□□□□□ -2.07
NUP54-208ENST00000508604 ABCD2Q9UBJ2 740 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 DAPK2Q9UIK4 370 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 IKZF3Q9UKT9 509 aa2.1□□□□□ -2.07
NUP54-208ENST00000508604 FAM205AQ6ZU69 1335 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 ZNF354AO60765 605 aaPredicted RBP2.09□□□□□ -2.07
NUP54-208ENST00000508604 RPL35AP18077 110 aaKnown RBP2.09□□□□□ -2.07
NUP54-208ENST00000508604 MNDAP41218 407 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 CDH18Q13634 790 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 MED22Q15528 200 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 SLC35D3Q5M8T2 416 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 GKAP1Q5VSY0 366 aaPredicted RBP2.09□□□□□ -2.07
NUP54-208ENST00000508604 CFAP77Q6ZQR2 320 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 EXOC8Q8IYI6 725 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 PDILTQ8N807 584 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 OR5M8Q8NGP6 311 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 C16orf70Q9BSU1 422 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 SHARPINQ9H0F6 387 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 PARLQ9H300 379 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 ASB8Q9H765 288 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 LNPEPQ9UIQ6 1025 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 PLCL2Q9UPR0 1127 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 SESN1Q9Y6P5 492 aa2.09□□□□□ -2.07
NUP54-208ENST00000508604 IGLV4-3A0A075B6K6 122 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 TPD52P55327 224 aaPredicted RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 IRX4P78413 519 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 DHODHQ02127 395 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 ZNF177Q13360 481 aaPredicted RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 DHX8Q14562 1220 aaKnown RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 NR1D2Q14995 579 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 TAB1Q15750 504 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 FAM189A2Q15884 450 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 JADE1Q6IE81 842 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 CCBE1Q6UXH8 406 aaPredicted RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 CPLX4Q7Z7G2 160 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 CERS3Q8IU89 383 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 ARHGAP24Q8N264 748 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 NPEPL1Q8NDH3 523 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 RRP36Q96EU6 259 aaKnown RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 CNRIP1Q96F85 164 aaPredicted RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 RAD9AQ99638 391 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 OVOL2Q9BRP0 275 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 YTHDF1Q9BYJ9 559 aaKnown RBP2.09□□□□□ -2.08
NUP54-208ENST00000508604 AGXT2Q9BYV1 514 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 MTMR12Q9C0I1 747 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 PREBQ9HCU5 417 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 OSER1Q9NX31 292 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 B3GAT1Q9P2W7 334 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 STUB1Q9UNE7 303 aa2.09□□□□□ -2.08
NUP54-208ENST00000508604 SHISA7A6NL88 538 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 XRCC3O43542 346 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 SH3BGRLO75368 114 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 WDPCPO95876 746 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 THY1P04216 161 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 HSPA8P11142 646 aaKnown RBP2.08□□□□□ -2.08
NUP54-208ENST00000508604 DARSP14868 501 aaKnown RBP2.08□□□□□ -2.08
NUP54-208ENST00000508604 TNFAIP3P21580 790 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 PTGER4P35408 488 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 GCNT1Q02742 428 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 TMEM154Q6P9G4 183 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 HEATR4Q86WZ0 1026 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 NUDT13Q86X67 352 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 CATSPER3Q86XQ3 398 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 TDRD5Q8NAT2 981 aaKnown RBP2.08□□□□□ -2.08
NUP54-208ENST00000508604 OR11H4Q8NGC9 324 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 MORC4Q8TE76 937 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 AGAP11Q8TF27 550 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 LPAR4Q99677 370 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 DPAGT1Q9H3H5 408 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 JPT2Q9H910 190 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 PDFQ9HBH1 243 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 PAG1Q9NWQ8 432 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 GTF3C4Q9UKN8 822 aa2.08□□□□□ -2.08
NUP54-208ENST00000508604 TSPAN1O60635 241 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 SNAP91O60641 907 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 DDHD2O94830 711 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms