RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 OCC1Q8TAD7 63 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 PHLDA1Q8WV24 401 aaPredicted RBP3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 PIGBQ92521 554 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 TM9SF4Q92544 642 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 TMEM143Q96AN5 459 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 HES6Q96HZ4 224 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 CCDC114Q96M63 670 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 FAM20AQ96MK3 541 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 SPATA33Q96N06 139 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 INTS14Q96SY0 518 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 INPP5KQ9BT40 448 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 URM1Q9BTM9 101 aaKnown RBP3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 SLC2A11Q9BYW1 496 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 MMP28Q9H239 520 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 Q9H8V8 135 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 TRPV4Q9HBA0 871 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZNF334Q9HCZ1 680 aaPredicted RBP3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 SDR39U1Q9NRG7 319 aaPredicted RBP3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 WDR83OSQ9Y284 106 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 EVPLQ92817 2033 aa3.73□□□□□ -1.81
HMGB1P28-201ENST00000507778 IGLV9-49A0A0B4J1Y8 123 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 A0A1W2PPW3 197 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CASTOR2A6NHX0 329 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ENO4A6NNW6 628 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CCER2I3L3R5 266 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 PSMD14O00487 310 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ARPC2O15144 300 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CIDEAO60543 219 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 RPS6KA5O75582 802 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ATP6AP2O75787 350 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 GSRP00390 522 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 FAM58BPP0C7Q3 252 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CASTP20810 708 aaKnown RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CDH3P22223 829 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CA6P23280 308 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CTNNA1P35221 906 aaKnown RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 KRT2P35908 639 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 TNNT3P45378 269 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 MTCP1P56278 107 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 B3GALT5-AS1P59052 145 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 KRT83P78385 493 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 PHEXP78562 749 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 KLC1Q07866 573 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ILF2Q12905 390 aaKnown RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 TAF10Q12962 218 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 PTK6Q13882 451 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 PHKG1Q16816 387 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 UGP2Q16851 508 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 TWISTNBQ3B726 338 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 FAM174BQ3ZCQ3 159 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZC2HC1CQ53FD0 456 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 LACTB2Q53H82 288 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 LRRC73Q5JTD7 316 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 C11orf88Q6PI97 169 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 C18orf65Q6ZTR6 163 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 TRMT1LQ7Z2T5 733 aaKnown RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 SMIM29Q86T20 159 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ISCA2Q86U28 154 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 DZIP1Q86YF9 867 aaKnown RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 MMD2Q8IY49 270 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 STPG4Q8N801 248 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 RASGEF1AQ8N9B8 481 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 HEXDCQ8WVB3 486 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 FCAMRQ8WWV6 532 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 RAD54LQ92698 747 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 CORO2AQ92828 525 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 MR1Q95460 341 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 VMP1Q96GC9 406 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 NAF1Q96HR8 494 aaKnown RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 FAM71F1Q96KD3 344 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 INPP4AQ96PE3 977 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 FNBP1Q96RU3 617 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 SNX25Q9H3E2 840 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 GSN-AS1Q9NRJ2 163 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 FGF21Q9NSA1 209 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ARGLU1Q9NWB6 273 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 WWOXQ9NZC7 414 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 DNAJB9Q9UBS3 223 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 ICAM5Q9UMF0 924 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 RIPK3Q9Y572 518 aa3.72□□□□□ -1.81
HMGB1P28-201ENST00000507778 TRAV24A0A0B4J272 114 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 C2orf81A6NN90 581 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 FAM86B1E9PN63 330 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 IFIT3O14879 490 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ATP6V0E1O15342 81 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 IGLV2-11P01706 119 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 FAM86B2P0C5J1 330 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 SPP1P10451 314 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 MUTP22033 750 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 CSTF2P33240 577 aaKnown RBP eCLIP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 WNT5AP41221 380 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 RPL21P46778 160 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 RGS7P49802 495 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 MFAP3P55082 362 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 MAZP56270 477 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 GSDMDP57764 484 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 HERV-K104P61576 105 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 TUBB4BP68371 445 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 TNK1Q13470 666 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms