RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 DCAF7P61962 342 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 PMPCAQ10713 525 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 PCBP2Q15366 365 aaKnown RBP eCLIP11.91□□□□□ -0.5
LSM6-204ENST00000504181 OR1C1Q15619 314 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 PCSK7Q16549 785 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 FBXW10Q5XX13 1052 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 SPINK14Q6IE38 97 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 HMBOX1Q6NT76 420 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 KDELC1Q6UW63 502 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 TMEM178AQ8NBL3 297 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 FLVCR1-AS1Q8TAF5 88 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 CCM2Q9BSQ5 444 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 TRIM7Q9C029 511 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.91□□□□□ -0.5
LSM6-204ENST00000504181 ZNF282Q9UDV7 671 aaPredicted RBP11.91□□□□□ -0.5
LSM6-204ENST00000504181 KLHL20Q9Y2M5 609 aa11.91□□□□□ -0.5
LSM6-204ENST00000504181 ANK3Q12955 4377 aaKnown RBP11.9□□□□□ -0.5
LSM6-204ENST00000504181 F12P00748 615 aaPredicted RBP11.9□□□□□ -0.5
LSM6-204ENST00000504181 CHRM5P08912 532 aaPredicted RBP11.9□□□□□ -0.5
LSM6-204ENST00000504181 CD46P15529 392 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 IL1R2P27930 398 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 SOX5P35711 763 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 EMP2P54851 167 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 FASTKQ14296 549 aaKnown RBP11.9□□□□□ -0.5
LSM6-204ENST00000504181 Q5PR19 223 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 UNC5AQ6ZN44 842 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 TMTC1Q8IUR5 882 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 LRRC49Q8IUZ0 686 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 MCATQ8IVS2 390 aaKnown RBP11.9□□□□□ -0.5
LSM6-204ENST00000504181 MCOLN2Q8IZK6 566 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 TMEM158Q8WZ71 300 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 Q96MF0 132 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 TP63Q9H3D4 680 aaPredicted RBP11.9□□□□□ -0.5
LSM6-204ENST00000504181 ZNF304Q9HCX3 659 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 RWDD2AQ9UIY3 292 aa11.9□□□□□ -0.5
LSM6-204ENST00000504181 A0A1W2PQ72 361 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 KLHL33A6NCF5 533 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 USP27XA6NNY8 438 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 ISM1B1AKI9 464 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 IFRD1O00458 451 aaPredicted RBP11.89□□□□□ -0.51
LSM6-204ENST00000504181 RASGRF2O14827 1237 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 CDC40O60508 579 aaKnown RBP eCLIP11.89□□□□□ -0.51
LSM6-204ENST00000504181 TCF4P15884 667 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 MAGP20916 626 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 CCNCP24863 283 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 CD96P40200 585 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 AP2B1P63010 937 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 GALNT2Q10471 571 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 CBLBQ13191 982 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 MAMLD1Q13495 774 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 GRM7Q14831 915 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 IFI16Q16666 785 aaKnown RBP11.89□□□□□ -0.51
LSM6-204ENST00000504181 TTC29Q8NA56 475 aaPredicted RBP11.89□□□□□ -0.51
LSM6-204ENST00000504181 HM13Q8TCT9 377 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 TIGD1Q96MW7 591 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 UTP23Q9BRU9 249 aaKnown RBP11.89□□□□□ -0.51
LSM6-204ENST00000504181 GANQ9H2C0 597 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 MVB12BQ9H7P6 319 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 PCDH18Q9HCL0 1135 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 IL1RAPL1Q9NZN1 696 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 MKL2Q9ULH7 1088 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 CBLCQ9ULV8 474 aa11.89□□□□□ -0.51
LSM6-204ENST00000504181 HEATR5BQ9P2D3 2071 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 GLYATL1P3A0A0U1RQE8 302 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 RCCD1A6NED2 376 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 FFAR3O14843 346 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 GPR42O15529 346 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 ARHGEF9O43307 516 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 MED26O95402 600 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 PDHA2P29803 388 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 PEBP1P30086 187 aaKnown RBP11.88□□□□□ -0.51
LSM6-204ENST00000504181 SHMT2P34897 504 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 JAM2P57087 298 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 POLR2FP61218 127 aaKnown RBP11.88□□□□□ -0.51
LSM6-204ENST00000504181 MMRN1Q13201 1228 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 ITGA9Q13797 1035 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 BOP1Q14137 746 aaKnown RBP11.88□□□□□ -0.51
LSM6-204ENST00000504181 BCL7AQ4VC05 210 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 HSP90AA4PQ58FG1 418 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 ACER2Q5QJU3 275 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 YOD1Q5VVQ6 348 aaPredicted RBP11.88□□□□□ -0.51
LSM6-204ENST00000504181 OR10Q1Q8NGQ4 319 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 ZNF354BQ96LW1 612 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 ZNF700Q9H0M5 742 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 OR52A5Q9H2C5 316 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 PARVAQ9NVD7 372 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 BEX4Q9NWD9 120 aaPredicted RBP11.88□□□□□ -0.51
LSM6-204ENST00000504181 ZDHHC9Q9Y397 364 aa11.88□□□□□ -0.51
LSM6-204ENST00000504181 HEATR5AQ86XA9 2040 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 SCN3AQ9NY46 2000 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 GAPDHSO14556 408 aaPredicted RBP11.87□□□□□ -0.51
LSM6-204ENST00000504181 BUD23O43709 281 aaKnown RBP11.87□□□□□ -0.51
LSM6-204ENST00000504181 SGTAO43765 313 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 HEXBP07686 556 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 SP1P08047 785 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 ICAM2P13598 275 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 ATP1A3P13637 1013 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 CD53P19397 219 aa11.87□□□□□ -0.51
LSM6-204ENST00000504181 FBLP22087 321 aaKnown RBP11.87□□□□□ -0.51
LSM6-204ENST00000504181 HMGCLP35914 325 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms