RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MXI1P50539 228 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CYP2J2P51589 502 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 TKTL1P51854 596 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 GEMIN4P57678 1058 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 HNRNPKP61978 463 aaKnown RBP eCLIP3.91□□□□□ -1.78
USP54-217ENST00000498213 FKBP3Q00688 224 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 PSG6Q00889 435 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 ECT2LQ008S8 904 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 GCNT1Q02742 428 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 LRRC63Q05C16 580 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CDC20Q12834 499 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CDH18Q13634 790 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CKAP5Q14008 2032 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CST6Q15828 149 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 RABGAP1LQ5R372 815 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 BSPRYQ5W0U4 402 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 HIST2H2BDQ6DRA6 164 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 LCLAT1Q6UWP7 414 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 ZNF517Q6ZMY9 492 aaPredicted RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 KRBA2Q6ZNG9 492 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CHST9Q7L1S5 443 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 ENOSF1Q7L5Y1 443 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 BCDIN3DQ7Z5W3 292 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 KCTD20Q7Z5Y7 419 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 SCD5Q86SK9 330 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 ACOT1Q86TX2 421 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 PIGZQ86VD9 579 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 MFN1Q8IWA4 741 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 SIX6OS1Q8N1H7 587 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 MYO1HQ8N1T3 1032 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 PPP1R16AQ96I34 528 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 VPS50Q96JG6 964 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 BTN2A3PQ96KV6 586 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 RANBP9Q96S59 729 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 OMDQ99983 421 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 STRADBQ9C0K7 418 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 SMYD3Q9H7B4 428 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 TRNAU1APQ9NX07 287 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 RAB20Q9NX57 234 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 COPG2Q9UBF2 871 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 MGAT4CQ9UBM8 478 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 LPAR3Q9UBY5 353 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 HOOK1Q9UJC3 728 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 MID2Q9UJV3 735 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 G3BP2Q9UN86 482 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 RPH3AQ9Y2J0 694 aaPredicted RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 NME7Q9Y5B8 376 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CLIC4Q9Y696 253 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 NSD1Q96L73 2696 aaPredicted RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 ABCA4P78363 2273 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 TGP01266 2768 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 TCHHQ07283 1943 aa3.9□□□□□ -1.78
USP54-217ENST00000498213 TMEM110-MUSTN1A8MSY1 372 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 VSTM5A8MXK1 200 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CLDN5O00501 218 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 SCAMP1O15126 338 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 MED7O43513 233 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ACSL4O60488 711 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CLDN11O75508 207 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 GNA14O95837 355 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 TBX18O95935 607 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 HLA-DRAP01903 254 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 APOEP02649 317 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CCDC130P13994 396 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 HNRNPA2B1P22626 353 aaKnown RBP3.9□□□□□ -1.79
USP54-217ENST00000498213 NR2F2P24468 414 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 PEX2P28328 305 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 SSTR2P30874 369 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 MAT2AP31153 395 aaKnown RBP3.9□□□□□ -1.79
USP54-217ENST00000498213 AKT2P31751 481 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 SLC8A1P32418 973 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 RABIFP47224 123 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 BLKP51451 505 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ADPRHP54922 357 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 TIRAPP58753 221 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 YPEL5P62699 121 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 KRT83P78385 493 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CDK18Q07002 472 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 PTK2BQ14289 1009 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 GFOD2Q3B7J2 385 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 C5orf22Q49AR2 442 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 VWA2Q5GFL6 755 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 MS4A13Q5J8X5 152 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 C9orf64Q5T6V5 341 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 RESP18Q5W5W9 173 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
USP54-217ENST00000498213 KIAA1161Q6NSJ0 714 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ZNF813Q6ZN06 617 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 DCDC5Q6ZRR9 648 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ARCQ7LC44 396 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ABI3BPQ7Z7G0 1075 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 SETD3Q86TU7 594 aaPredicted RBP3.9□□□□□ -1.79
USP54-217ENST00000498213 CACNA2D3Q8IZS8 1091 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 NANOGP1Q8N7R0 232 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ATP6V0D2Q8N8Y2 350 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 FAM156AQ8NDB6 213 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 OSR1Q8TAX0 266 aaPredicted RBP3.9□□□□□ -1.79
USP54-217ENST00000498213 HCAR2Q8TDS4 363 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 SLC35F5Q8WV83 523 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 OR8D1Q8WZ84 308 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms