RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CDKN2AIPNLQ96HQ2 116 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 DNAJC7Q99615 494 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 CHP1Q99653 195 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 CRB3Q9BUF7 120 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 GOLPH3Q9H4A6 298 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 NLE1Q9NVX2 485 aaPredicted RBP13.36□□□□□ -0.27
VARS-227ENST00000489979 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.36□□□□□ -0.27
VARS-227ENST00000489979 PTGFRNQ9P2B2 879 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 FEZ2Q9UHY8 353 aaPredicted RBP13.36□□□□□ -0.27
VARS-227ENST00000489979 ALG6Q9Y672 507 aa13.36□□□□□ -0.27
VARS-227ENST00000489979 APOC4-APOC2K7ER74 178 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 QSOX1O00391 747 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 MAP2K7O14733 419 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 UNC5CO95185 931 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 APOC2P02655 101 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 ACPPP15309 386 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 SOX11P35716 441 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 NSG1P42857 185 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 CARSP49589 748 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 TNFSF10P50591 281 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 CSE1LP55060 971 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 SRSF11Q05519 484 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 KLC1Q07866 573 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 TCEAL1Q15170 157 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 INAQ16352 499 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 VWA2Q5GFL6 755 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 TCTE1Q5JU00 501 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 CAVIN1Q6NZI2 390 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 FIGLAQ6QHK4 219 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 TMEM207Q6UWW9 146 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 BBS12Q6ZW61 710 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 NLRP9Q7RTR0 991 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 CCDC110Q8TBZ0 833 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 BRIX1Q8TDN6 353 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 SELENOSQ9BQE4 189 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 FERMT1Q9BQL6 677 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 TRIM8Q9BZR9 551 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 NHEJ1Q9H9Q4 299 aaPredicted RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 ARNT2Q9HBZ2 717 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 LUC7LQ9NQ29 371 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 INTS7Q9NVH2 962 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 ZNHIT6Q9NWK9 470 aaKnown RBP13.35□□□□□ -0.27
VARS-227ENST00000489979 IL1RAPL1Q9NZN1 696 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 IMPACTQ9P2X3 320 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 CIDEBQ9UHD4 219 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 SH3BGRL2Q9UJC5 107 aa13.35□□□□□ -0.27
VARS-227ENST00000489979 KCNN4O15554 427 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 USP1O94782 785 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 MED26O95402 600 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 F10P00742 488 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ZGLP1P0C6A0 271 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 PRR35P0CG20 571 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 TPH1P17752 444 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 MST1P26927 711 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 CA7P43166 264 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 PLOD1Q02809 727 aaPredicted RBP13.34□□□□□ -0.27
VARS-227ENST00000489979 ITIH4Q14624 930 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 FAM214AQ32MH5 1076 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ZC3H12BQ5HYM0 836 aaKnown RBP13.34□□□□□ -0.27
VARS-227ENST00000489979 CCDC181Q5TID7 509 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ATG9BQ674R7 924 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 MTFR2Q6P444 385 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 PACS1Q6VY07 963 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 RPTNQ6XPR3 784 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ZNF295-AS1Q8N0V1 137 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 SIRT6Q8N6T7 355 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ACTL9Q8TC94 416 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 STT3BQ8TCJ2 826 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 STYXQ8WUJ0 223 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 PSMF1Q92530 271 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 HAS2Q92819 552 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 MIEF2Q96C03 454 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 CCDC42Q96M95 316 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ZNF285Q96NJ3 590 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 IL17FQ96PD4 163 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 MENTQ9BUN1 341 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.34□□□□□ -0.27
VARS-227ENST00000489979 SEC14L3Q9UDX4 400 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 C3orf18Q9UK00 162 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 ITPR3Q14573 2671 aa13.34□□□□□ -0.27
VARS-227ENST00000489979 CPAMD8Q8IZJ3 1885 aa13.33□□□□□ -0.27
VARS-227ENST00000489979 NSG1A0A0A6YYJ2 146 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 MACROD2A1Z1Q3 448 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 FITM1A5D6W6 292 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 OR51F1A6NGY5 319 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 STK10O94804 968 aaKnown RBP13.33□□□□□ -0.28
VARS-227ENST00000489979 S1PR4O95977 384 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 OR56A5P0C7T3 313 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 COX6A1P12074 109 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 CD9P21926 228 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 VSX2P58304 361 aaPredicted RBP13.33□□□□□ -0.28
VARS-227ENST00000489979 OCA2Q04671 838 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 POU6F1Q14863 301 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 SF1Q15637 639 aaKnown RBP13.33□□□□□ -0.28
VARS-227ENST00000489979 DNAJC21Q5F1R6 531 aaKnown RBP13.33□□□□□ -0.28
VARS-227ENST00000489979 WASHC2DQ5SRD0 308 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 ARHGEF18Q6ZSZ5 1173 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 NDUFAF7Q7L592 441 aa13.33□□□□□ -0.28
VARS-227ENST00000489979 CDKL3Q8IVW4 592 aaPredicted RBP13.33□□□□□ -0.28
VARS-227ENST00000489979 CFAP61Q8NHU2 1237 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms