RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ISM1B1AKI9 464 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 MATN2O00339 956 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 COPEO14579 308 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 GIPC1O14908 333 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 CPNE6O95741 557 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 FTH1P19P0C7X4 201 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 POLR2CP19387 275 aaPredicted RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 PKLRP30613 574 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 GMPRP36959 345 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 GLRBP48167 497 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 HNMTP50135 292 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 CSRP3P50461 194 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 PNLIPRP1P54315 467 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 CDKL1Q00532 357 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 DLG1Q12959 904 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 SQSTM1Q13501 440 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 TSTA3Q13630 321 aaPredicted RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 SPIDRQ14159 915 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 OR4D1Q15615 310 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 CCSMST1Q4G0I0 132 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 IRGCQ6NXR0 463 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 WDR74Q6RFH5 385 aaPredicted RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 SBSNQ6UWP8 590 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 SRRM1Q8IYB3 904 aaKnown RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 CENPLQ8N0S6 344 aaPredicted RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 TCAIMQ8N3R3 496 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 C2orf73Q8N5S3 287 aaPredicted RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 KDF1Q8NAX2 398 aaPredicted RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 OR2L8Q8NGY9 312 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 RHEBL1Q8TAI7 183 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 MZB1Q8WU39 189 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 SMPDL3AQ92484 453 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 DLG3Q92796 817 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 EXT2Q93063 718 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 ALKBH8Q96BT7 664 aaKnown RBP9.97□□□□□ -0.81
SKA1-204ENST00000488454 ZBTB9Q96C00 473 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 IL17FQ96PD4 163 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 VIPAS39Q9H9C1 493 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 RDH14Q9HBH5 336 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 EURLQ9NYK6 297 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 CD274Q9NZQ7 290 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 SENP1Q9P0U3 644 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 GRID1Q9ULK0 1009 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 ICKQ9UPZ9 632 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 PCDHB11Q9Y5F2 797 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 DNAH14Q0VDD8 3507 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 PIKFYVEQ9Y2I7 2098 aa9.97□□□□□ -0.81
SKA1-204ENST00000488454 TP53BP1Q12888 1972 aaPredicted RBP9.96□□□□□ -0.81
SKA1-204ENST00000488454 NCF1BA6NI72 391 aaPredicted RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 NCF1CA8MVU1 366 aaPredicted RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 FOXO6A8MYZ6 492 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 SUPT3HB4E1H0 165 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 TMX2-CTNND1H3BSU7 103 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 BTN3A3O00478 584 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 MAN1A2O60476 641 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 KERAO60938 352 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 SMIM24O75264 130 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 GLRA3O75311 464 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 SUPT3HO75486 399 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 SLC16A8O95907 504 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 CHRM5P08912 532 aaPredicted RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 TPBGLP0DKB5 382 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 NCF1P14598 390 aaPredicted RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 TAC1P20366 129 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 CRHR1P34998 444 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 RPA3P35244 121 aaPredicted RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 CAPZBP47756 277 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 GRB7Q14451 532 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 KIR2DS3Q14952 304 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 TGFBIQ15582 683 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 SF1Q15637 639 aaKnown RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 CYP2A13Q16696 494 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 PHKG1Q16816 387 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 CDKL4Q5MAI5 379 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 THEMIS2Q5TEJ8 643 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 SULT1C3Q6IMI6 304 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 TMEM71Q6P5X7 295 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 DHRS13Q6UX07 377 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 TREML4Q6UXN2 200 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 RBM44Q6ZP01 1051 aaKnown RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 SLCO6A1Q86UG4 719 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 TRABD2AQ86V40 505 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 RASGRP3Q8IV61 690 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 C4orf33Q8N1A6 199 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 PLD6Q8N2A8 252 aaKnown RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 CCDC63Q8NA47 563 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 RSC1A1Q92681 617 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 PTERQ96BW5 349 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 FBXL8Q96CD0 374 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 PGM2Q96G03 612 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 MED8Q96G25 268 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 TGM7Q96PF1 710 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 MRPL57Q9BQC6 102 aaKnown RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 RAB33BQ9H082 229 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 MRPL46Q9H2W6 279 aaKnown RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 CNOT10Q9H9A5 744 aaKnown RBP9.96□□□□□ -0.82
SKA1-204ENST00000488454 ABCF3Q9NUQ8 709 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 DLL3Q9NYJ7 618 aa9.96□□□□□ -0.82
SKA1-204ENST00000488454 ACTR10Q9NZ32 417 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms