RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KRT87PA6NCN2 255 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 GALR2O43603 387 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 MGRN1O60291 552 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 WDR47O94967 919 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 C1orf105O95561 183 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 WNT1P04628 370 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 CD1EP15812 388 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ITPKAP23677 461 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 HTR1BP28222 390 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ACADLP28330 430 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 CD38P28907 300 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 HMOX2P30519 316 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ARL1P40616 181 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 BDKRB1P46663 353 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 HTR6P50406 440 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 GRB7Q14451 532 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 NFE2L1Q14494 772 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 GGTA1PQ4G0N0 100 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 WDR45BQ5MNZ6 344 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 TCHHL1Q5QJ38 904 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 FBXW10Q5XX13 1052 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ENPP7Q6UWV6 458 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 AMZ2Q86W34 360 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 OR2T11Q8NH01 316 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 CFAP61Q8NHU2 1237 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 PDXPQ96GD0 296 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 OR52A5Q9H2C5 316 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 GPR27Q9NS67 375 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 DNAJC11Q9NVH1 559 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 RIC8BQ9NVN3 520 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 STOX2Q9P2F5 926 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 GIMAP2Q9UG22 337 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 MOSPD1Q9UJG1 213 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 PNMA8BQ9ULN7 279 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 FANCMQ8IYD8 2048 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 LOC100653049A0A140TA62 436 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 PSMD12O00232 456 aaPredicted RBP13.78□□□□□ -0.2
CUX1-209ENST00000487284 TOR1BO14657 336 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 KRT34O76011 436 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 CLDN9O95484 217 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 EZRP15311 586 aaKnown RBP13.78□□□□□ -0.2
CUX1-209ENST00000487284 KELP23276 732 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 CNR2P34972 360 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 MRPL19P49406 292 aaKnown RBP13.78□□□□□ -0.2
CUX1-209ENST00000487284 ACADVLP49748 655 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 MXRA7P84157 204 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 RIPK1Q13546 671 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 CYLC2Q14093 348 aaPredicted RBP13.78□□□□□ -0.2
CUX1-209ENST00000487284 PLA2G4EQ3MJ16 856 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 CCSMST1Q4G0I0 132 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 LYSMD4Q5XG99 296 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 UNC5DQ6UXZ4 953 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 FAM83HQ6ZRV2 1179 aaPredicted RBP13.78□□□□□ -0.2
CUX1-209ENST00000487284 CEP68Q76N32 757 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 SPATA19Q7Z5L4 167 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 PDZD3Q86UT5 571 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 ARHGAP24Q8N264 748 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 SNX31Q8N9S9 440 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 FAM13CQ8NE31 585 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 OR1E3Q8WZA6 343 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 MCUR1Q96AQ8 359 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 KLHDC7BQ96G42 594 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 TM7SF3Q9NS93 570 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 ZNHIT2Q9UHR6 403 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 SUFUQ9UMX1 484 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 RNF11Q9Y3C5 154 aa13.78□□□□□ -0.2
CUX1-209ENST00000487284 DNAH14Q0VDD8 3507 aa13.77□□□□□ -0.2
CUX1-209ENST00000487284 CACNA1HO95180 2353 aa13.77□□□□□ -0.2
CUX1-209ENST00000487284 PRSS38A1L453 326 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 SCAMP1O15126 338 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 KMOO15229 486 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 ITGAXP20702 1163 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 GPX3P22352 226 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 IMPA1P29218 277 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 GNPDA1P46926 289 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 STX1BP61266 288 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 CUL3Q13618 768 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 FASTKQ14296 549 aaKnown RBP13.77□□□□□ -0.21
CUX1-209ENST00000487284 MAPRE2Q15555 327 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 GSTA3Q16772 222 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 AGTRAPQ6RW13 159 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 IL27RAQ6UWB1 636 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 SCIMPQ6UWF3 145 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 Q6ZSR9 355 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 L3MBTL4Q8NA19 623 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 MFSD2AQ8NA29 543 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 OR56A3Q8NH54 315 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 FAM174AQ8TBP5 190 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 TSACCQ96A04 125 aaPredicted RBP13.77□□□□□ -0.21
CUX1-209ENST00000487284 PYCR2Q96C36 320 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 MAGEB10Q96LZ2 347 aaPredicted RBP13.77□□□□□ -0.21
CUX1-209ENST00000487284 PKP4Q99569 1192 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 RASSF4Q9H2L5 321 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 CAAP1Q9H8G2 361 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 RMI1Q9H9A7 625 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 CARS2Q9HA77 564 aaKnown RBP13.77□□□□□ -0.21
CUX1-209ENST00000487284 KLQ9UEF7 1012 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 SLC23A2Q9UGH3 650 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 PCDHGA2Q9Y5H1 932 aa13.77□□□□□ -0.21
CUX1-209ENST00000487284 LAMA1P25391 3075 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms