RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 EFHD1Q9BUP0 239 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 FRMD8P1Q9BZ68 369 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 ULBP3Q9BZM4 244 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 RAB33BQ9H082 229 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 WWP1Q9H0M0 922 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 VPS37BQ9H9H4 285 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 IMP3Q9NV31 184 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 SIDT1Q9NXL6 827 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 EPHA6Q9UF33 1036 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 PILRAQ9UKJ1 303 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 ACSL5Q9ULC5 683 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 GUCA1BQ9UMX6 200 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 PLA2G2DQ9UNK4 145 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 HEBP2Q9Y5Z4 205 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 COLEC10Q9Y6Z7 277 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 C17orf113A0A1B0GUU1 675 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 TCRBV7S2A1N4TA0A589 114 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ERI2A8K979 691 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF891A8MT65 544 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 H7C0S8 307 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 CCL22O00626 93 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ARHGAP6O43182 974 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SGTAO43765 313 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 LIASO43766 372 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 MSL3P1P0C860 447 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SFTPCP11686 197 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 TPH1P17752 444 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 WT1P19544 449 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ACRV1P26436 265 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 NDUFS1P28331 727 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 MC4RP32245 332 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 FDFT1P37268 417 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SEPHS1P49903 392 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 CACNG1Q06432 222 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ABHD18Q0P651 414 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 LAMB3Q13751 1172 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 KRT33BQ14525 404 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 POU6F1Q14863 301 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SKIDA1Q1XH10 827 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 LINC00303Q3SY05 128 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ZRANB3Q5FWF4 1079 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ARMC6Q6NXE6 501 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF449Q6P9G9 518 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 TAS2R42Q7RTR8 314 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 OOSP2Q86WS3 158 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 PPP1R3BQ86XI6 285 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 KMT5CQ86Y97 462 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC13A5Q86YT5 568 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 CFAP206Q8IYR0 622 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ESX1Q8N693 406 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 HM13Q8TCT9 377 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 STYXQ8WUJ0 223 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 NAT14Q8WUY8 206 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 ATG4AQ8WYN0 398 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 KLHL6Q8WZ60 621 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 UBXN4Q92575 508 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 EXTL1Q92935 676 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 OR6C1Q96RD1 312 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 CD180Q99467 661 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SPATA25Q9BR10 227 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC12A9Q9BXP2 914 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SPRY4Q9C004 299 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SEMA4CQ9C0C4 833 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 FAM96AQ9H5X1 160 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 KIR3DX1Q9H7L2 352 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 GPN2Q9H9Y4 310 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 APMAPQ9HDC9 416 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 NLE1Q9NVX2 485 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 TMEM184BQ9Y519 407 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 CFAP20Q9Y6A4 193 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 PIEZO2Q9H5I5 2752 aa6.62□□□□□ -1.35
CCDC88A-213ENST00000476903 SPTBP11277 2137 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 IGLV3-16A0A075B6K0 115 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 TRBV5-4A0A0C4DH59 114 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 UBA6A0AVT1 1052 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SH3D21A4FU49 640 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 OR5K3A6NET4 321 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 TLCD2A6NGC4 264 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 MROH6A6NGR9 719 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 E7EVH7 732 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 QSOX1O00391 747 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 IFRD1O00458 451 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 KIF1CO43896 1103 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 AP2A2O94973 939 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 IFNB1P01574 187 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 POLBP06746 335 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 GSTM1P09488 218 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CCDC175P0C221 793 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 FGF5P12034 268 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 NELFEP18615 380 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 STAT5AP42229 794 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 LMAN1P49257 510 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CDKN1CP49918 316 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 PPP1CAP62136 330 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CYP4F2P78329 520 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 MC1RQ01726 317 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CDH17Q12864 832 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 TUBB3Q13509 450 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 RPS6KA1Q15418 735 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 OASLQ15646 514 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms