RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MLIPQ5VWP3 458 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 NEPROQ6NW34 567 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 CLEC18BQ6UXF7 455 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 SDCCAG8Q86SQ7 713 aaPredicted RBP17.83■□□□□ 0.44
COL7A1-209ENST00000474432 CILP2Q8IUL8 1156 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 TEX19Q8NA77 164 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 CLEC18CQ8NCF0 446 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 MCUQ8NE86 351 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 FDCSPQ8NFU4 85 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 OR2A1Q8NGT9 310 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 SLC22A18Q96BI1 424 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 FAM136AQ96C01 138 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 SLC30A3Q99726 388 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 KLK4Q9Y5K2 254 aa17.83■□□□□ 0.44
COL7A1-209ENST00000474432 SHANK1Q9Y566 2161 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 FAM237BA0A1B0GVD1 139 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 C9J4A7 227 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 ESR1P03372 595 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 UMODP07911 640 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 MCM3P25205 808 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 ATP5DP30049 168 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 CD97P48960 835 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 MLLT10P55197 1068 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 DCDP81605 110 aaKnown RBP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 SRSF1Q07955 248 aaKnown RBP eCLIP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 FASTKQ14296 549 aaKnown RBP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 SLC9A5Q14940 896 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 SF1Q15637 639 aaKnown RBP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 NADK2Q4G0N4 442 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 NKAIN1Q4KMZ8 207 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 ACSBG2Q5FVE4 666 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 RNF187Q5TA31 235 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 CNSTQ6PJW8 725 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 OTUD6BQ8N6M0 293 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 NAT8LQ8N9F0 302 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 SERPINB12Q96P63 405 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 NUDT9Q9BW91 350 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 SLC39A10Q9ULF5 831 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 SRPK3Q9UPE1 567 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 NUP210LQ5VU65 1888 aa17.82■□□□□ 0.44
COL7A1-209ENST00000474432 USP9XQ93008 2570 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-209ENST00000474432 HEATR5BQ9P2D3 2071 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 GOLGA8MH3BSY2 632 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 MED26O95402 600 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 ERGP11308 486 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 PKMP14618 531 aaKnown RBP17.81■□□□□ 0.44
COL7A1-209ENST00000474432 CLCN7P51798 805 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 PGDP52209 483 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 SSPNQ14714 243 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 CYP2A13Q16696 494 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 ZNF549Q6P9A3 640 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 CCDC137Q6PK04 289 aaKnown RBP17.81■□□□□ 0.44
COL7A1-209ENST00000474432 MED25Q71SY5 747 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 COX15Q7KZN9 410 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 MRGPREQ86SM8 312 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 DENND6AQ8IWF6 608 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 SLC35F6Q8N357 371 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 TMEM102Q8N9M5 508 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-209ENST00000474432 OR2Y1Q8NGV0 311 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 GIMAP7Q8NHV1 300 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 SIGLEC10Q96LC7 697 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 NDC1Q9BTX1 674 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 RAB11FIP5Q9BXF6 653 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-209ENST00000474432 TSR3Q9UJK0 312 aaKnown RBP17.81■□□□□ 0.44
COL7A1-209ENST00000474432 PADI2Q9Y2J8 665 aa17.81■□□□□ 0.44
COL7A1-209ENST00000474432 PTRH2Q9Y3E5 179 aaKnown RBP17.81■□□□□ 0.44
COL7A1-209ENST00000474432 COL12A1Q99715 3063 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 SDR42E2A6NKP2 422 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 ARHGEF33A8MVX0 844 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 TARM1B6A8C7 271 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 H3BMM5 538 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 ZNF185O15231 689 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 FKBP9O95302 570 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 OTX2P32243 289 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 SARNPP82979 210 aaKnown RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 DHX34Q14147 1143 aaKnown RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 PPP1R32Q7Z5V6 425 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 DTWD1Q8N5C7 304 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 OR2L3Q8NG85 312 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 ACTRT1Q8TDG2 376 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 ZUFSPQ96AP4 578 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 ZNF669Q96BR6 464 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 OSBPL9Q96SU4 736 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 MIPEPQ99797 713 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 C17orf62Q9BQA9 187 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 KCNF1Q9H3M0 494 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 SYNPO2LQ9H987 977 aa17.8■□□□□ 0.44
COL7A1-209ENST00000474432 XAB2Q9HCS7 855 aaKnown RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 INTS10Q9NVR2 710 aaKnown RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 IFT80Q9P2H3 777 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-209ENST00000474432 DOCK10Q96BY6 2186 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 MAGEB16A2A368 324 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 FITM1A5D6W6 292 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 MASP2O00187 686 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 PGRMC1O00264 195 aaKnown RBP17.79■□□□□ 0.44
COL7A1-209ENST00000474432 PHF2O75151 1096 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 PSIP1O75475 530 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms