RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ITPR2Q14571 2701 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 GOLGA8KD6RF30 607 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 GOLGA8TH3BQL2 631 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 AP3B1O00203 1094 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 NDUFS3O75489 264 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 C1orf105O95561 183 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 PSMB5P28074 263 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 CDK16Q00536 496 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 GBX1Q14549 363 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 TYSND1Q2T9J0 566 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 PRR30Q53SZ7 412 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 DCAF10Q5QP82 559 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 OTOAQ7RTW8 1153 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 MCATQ8IVS2 390 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 RBMXL3Q8N7X1 1067 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 GALNT11Q8NCW6 608 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 TRIM58Q8NG06 486 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 DENND1AQ8TEH3 1009 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 MAIP1Q8WWC4 291 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 ZNF285Q96NJ3 590 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 IP6K3Q96PC2 410 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 RAB11FIP5Q9BXF6 653 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 LUZP4Q9P127 313 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 TTC7AQ9ULT0 858 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 SOX13Q9UN79 622 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 MAP4K5Q9Y4K4 846 aa18.04■□□□□ 0.48
CCDC88B-206ENST00000473405 KPNA5O15131 536 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 CEP104O60308 925 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 DPM1O60762 260 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 AVILO75366 819 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 MCM3P25205 808 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 GRIA3P42263 894 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 CCZ1BP86790 482 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 CCZ1P86791 482 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 KCNJ11Q14654 390 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 SLC6A19Q695T7 634 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 CNSTQ6PJW8 725 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 FIGLAQ6QHK4 219 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 TTLL10Q6ZVT0 673 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 OTUD6BQ8N6M0 293 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 HMGCLL1Q8TB92 370 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 DLG3Q92796 817 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 RAD51AP1Q96B01 352 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 TRIM56Q9BRZ2 755 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 MFRPQ9BY79 579 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 P4HTMQ9NXG6 502 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 SLC39A10Q9ULF5 831 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 G3BP2Q9UN86 482 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 KLK4Q9Y5K2 254 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 ICE1Q9Y2F5 2266 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 HEATR5BQ9P2D3 2071 aa18.03■□□□□ 0.48
CCDC88B-206ENST00000473405 A0A1B0GX78 115 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 MASP2O00187 686 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 NRP2O60462 931 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 CTSVO60911 334 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 NIPSNAP2O75323 286 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 CD63P08962 238 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 GNLYP22749 145 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 MAGEA6P43360 314 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 SF1Q15637 639 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 TRIP13Q15645 432 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 VWA5B1Q5TIE3 1220 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 KIAA0930Q6ICG6 404 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 MRNIPQ6NTE8 343 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 TTC27Q6P3X3 843 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 COX15Q7KZN9 410 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 HPS6Q86YV9 775 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 LRRC8AQ8IWT6 810 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 EFCAB3Q8N7B9 438 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 GSDMBQ8TAX9 411 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 SKA2Q8WVK7 121 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 FKBP10Q96AY3 582 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 PTERQ96BW5 349 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 FAM136AQ96C01 138 aa18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 INTS7Q9NVH2 962 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-206ENST00000473405 ESPL1Q14674 2120 aa18.02■□□□□ 0.47
CCDC88B-206ENST00000473405 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 A0A1W2PPV9 198 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 DSCR3O14972 297 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 VPS4BO75351 444 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 FKBP9O95302 570 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 MATN4O95460 622 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 ONECUT2O95948 504 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 ALAS2P22557 587 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 ATP5DP30049 168 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 FMO4P31512 558 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 VPS41P49754 854 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 TERF1P54274 439 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 ADARP55265 1226 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 RNF187Q5TA31 235 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 ANKRD22Q5VYY1 191 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 TTC23LQ6PF05 361 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 CAND1Q86VP6 1230 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 GALNT16Q8N428 558 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 CLEC1AQ8NC01 280 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 OR2L3Q8NG85 312 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 PNPLA2Q96AD5 504 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 FER1L6-AS2Q96M78 137 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms