RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TRAF3Q13114 568 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 MTA1Q13330 715 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF542PQ5EBM4 170 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 TMC8Q8IU68 726 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 DHRSXQ8N5I4 330 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 TSPAN14Q8NG11 270 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 REXO4Q9GZR2 422 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC32A1Q9H598 525 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 IKZF5Q9H5V7 419 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 SDR39U1Q9NRG7 319 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 SH3GLB1Q9Y371 365 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 FEZF1A0PJY2 475 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 IGLON5A6NGN9 336 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 TPST2O60704 377 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 ATG13O75143 517 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 TIMP2P16035 220 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 RPS13P62277 151 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 RPS26P62854 115 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 OCA2Q04671 838 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 FAM98BQ52LJ0 330 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 THOC6Q86W42 341 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 DEFB119Q8N690 84 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 BPIFB1Q8TDL5 484 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 ACPTQ9BZG2 426 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 MIEF1Q9NQG6 463 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 PDP2Q9P2J9 529 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 DYRK1BQ9Y463 629 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 FADS3Q9Y5Q0 445 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 NCOR1O75376 2440 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 NYNRINQ9P2P1 1898 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 ADH1CP00326 375 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 CYP17A1P05093 508 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 POLR2IP36954 125 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 NADK2Q4G0N4 442 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 DTWD1Q8N5C7 304 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 RASGEF1AQ8N9B8 481 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 OR8D1Q8WZ84 308 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF382Q96SR6 550 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 YIPF4Q9BSR8 244 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 RPP25Q9BUL9 199 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 TBC1D14Q9P2M4 693 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 KCNE2Q9Y6J6 123 aa13.37□□□□□ -0.27
CCDC88A-211ENST00000471947 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ARHGEF33A8MVX0 844 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 PSMB5P28074 263 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 CHI3L1P36222 383 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 KIR3DL1P43629 444 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 OR1E2P47887 323 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 DOC2AQ14183 400 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 AASDHQ4L235 1098 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 LIN52Q52LA3 116 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 FAM91A1Q658Y4 838 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 PDE12Q6L8Q7 609 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 SPATA19Q7Z5L4 167 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ADIPOR2Q86V24 386 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 SMYD1Q8NB12 490 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 HOPXQ9BPY8 73 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 IRAK4Q9NWZ3 460 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 PADI4Q9UM07 663 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ACOT8O14734 319 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 FPGTO14772 594 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 EIF2S1P05198 315 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 IL7RP16871 459 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ALDH4A1P30038 563 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 GJA8P48165 433 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ESRRGP62508 458 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ACVR1Q04771 509 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 CYP4F3Q08477 520 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 SLBPQ14493 270 aaKnown RBP eCLIP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 GSTA3Q16772 222 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 GPR33Q49SQ1 333 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 TMEM240Q5SV17 173 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 FRG2Q64ET8 278 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 VTCN1Q7Z7D3 282 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ZDHHC13Q8IUH4 622 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 CATSPER1Q8NEC5 780 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 MAELQ96JY0 434 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 FRG2BQ96QU4 278 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC6A13Q9NSD5 602 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 GVINP1Q7Z2Y8 2422 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 VIPR1P32241 457 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 CDKN2CP42773 168 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 CLCNKAP51800 687 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 FAM78AQ5JUQ0 283 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 LDLRAP1Q5SW96 308 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 PPP2R2DQ66LE6 453 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 TANGO2Q6ICL3 276 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 HORMAD1Q86X24 394 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 HDDC3Q8N4P3 179 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 STOX2Q9P2F5 926 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 TRPC4Q9UBN4 977 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 TAC3Q9UHF0 121 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF510Q9Y2H8 683 aa13.36□□□□□ -0.27
CCDC88A-211ENST00000471947 FAM234BA2RU67 622 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 GAPDHSO14556 408 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 STX16O14662 325 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF821O75541 412 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 FTH1P02794 183 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ANXA6P08133 673 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 FUT4P22083 530 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms