RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CDKN2DP55273 166 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 SH3BP2P78314 561 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 PDAP1Q13442 181 aaKnown RBP17.15■□□□□ 0.34
COL7A1-205ENST00000465238 GBX1Q14549 363 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 KLHL38Q2WGJ6 581 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 CACHD1Q5VU97 1274 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 ARMC6Q6NXE6 501 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 PTRH1Q86Y79 214 aaKnown RBP17.15■□□□□ 0.34
COL7A1-205ENST00000465238 RASGRP3Q8IV61 690 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 OR52E1Q8NGJ3 308 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 GIMAP7Q8NHV1 300 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 C9orf43Q8TAL5 461 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-205ENST00000465238 CD200R1Q8TD46 325 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 CYTH2Q99418 400 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 SRMSQ9H3Y6 488 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 TFB2MQ9H5Q4 396 aaKnown RBP17.15■□□□□ 0.34
COL7A1-205ENST00000465238 NBASA2RRP1 2371 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 FAM95CA0A1B0GW59 222 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 OR6C74A6NCV1 312 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 KIF1CO43896 1103 aaKnown RBP17.14■□□□□ 0.33
COL7A1-205ENST00000465238 C1QAP02745 245 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 FGF5P12034 268 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 NELFEP18615 380 aaKnown RBP17.14■□□□□ 0.33
COL7A1-205ENST00000465238 SPRP35270 261 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-205ENST00000465238 DLSTP36957 453 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 RGS4P49798 205 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 SLC12A2P55011 1212 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 TLE1Q04724 770 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 DEFB109BQ30KR1 87 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 GRTP1Q5TC63 336 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 LRRC8EQ6NSJ5 796 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 IRGCQ6NXR0 463 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 C16orf46Q6P387 395 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 FAM92BQ6ZTR7 304 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 NEK10Q6ZWH5 1172 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 OOSP2Q86WS3 158 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 DCUN1D3Q8IWE4 304 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 CPNE9Q8IYJ1 553 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 MAGEC3Q8TD91 643 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 UBXN4Q92575 508 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 VPS39Q96JC1 886 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 HRASLS2Q9NWW9 162 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 PCDHB3Q9Y5E6 796 aa17.14■□□□□ 0.33
COL7A1-205ENST00000465238 EIF3FO00303 357 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-205ENST00000465238 KIAA0754O94854 1291 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 MATN4O95460 622 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 FAM153BP0C7A2 387 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 MPC1LP0DKB6 136 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 FDXRP22570 491 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 TNFRSF8P28908 595 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 SHMT2P34897 504 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 CCNFP41002 786 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 TIAL1Q01085 375 aaKnown RBP eCLIP17.13■□□□□ 0.33
COL7A1-205ENST00000465238 PRKAA1Q13131 559 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 FAM153CQ494X1 144 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.13■□□□□ 0.33
COL7A1-205ENST00000465238 PAQR3Q6TCH7 311 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 TRMT10CQ7L0Y3 403 aaKnown RBP17.13■□□□□ 0.33
COL7A1-205ENST00000465238 AMIGO1Q86WK6 493 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 PPP1R3BQ86XI6 285 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 GALNT6Q8NCL4 622 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 RAD51AP1Q96B01 352 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 RBBP8Q99708 897 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 XKR8Q9H6D3 395 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 ANKZF1Q9H8Y5 726 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 SEMA5BQ9P283 1151 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 LNPEPQ9UIQ6 1025 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 ANAPC2Q9UJX6 822 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 KCND3Q9UK17 655 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 CROTQ9UKG9 612 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 RUVBL2Q9Y230 463 aaKnown RBP17.13■□□□□ 0.33
COL7A1-205ENST00000465238 MTO1Q9Y2Z2 717 aaKnown RBP17.13■□□□□ 0.33
COL7A1-205ENST00000465238 NFS1Q9Y697 457 aa17.13■□□□□ 0.33
COL7A1-205ENST00000465238 COL12A1Q99715 3063 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 A0A087WUV0 522 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-205ENST00000465238 OR5K3A6NET4 321 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 C1orf105O95561 183 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 MT-ND3P03897 115 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 CATP04040 527 aaKnown RBP17.12■□□□□ 0.33
COL7A1-205ENST00000465238 CCNYL3P0C7X3 344 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 F8A1P23610 371 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 PMS2P54278 862 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 IL2P60568 153 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 POU4F1Q01851 419 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 GSPT2Q8IYD1 628 aaKnown RBP17.12■□□□□ 0.33
COL7A1-205ENST00000465238 RAB42Q8N4Z0 105 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 EEF1AKMT1Q8WVE0 214 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.12■□□□□ 0.33
COL7A1-205ENST00000465238 MRRFQ96E11 262 aaKnown RBP17.12■□□□□ 0.33
COL7A1-205ENST00000465238 SLC41A2Q96JW4 573 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 OLFM1Q99784 485 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 MCMBPQ9BTE3 642 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 ACSS3Q9H6R3 686 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 PDE7BQ9NP56 450 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 SLC39A10Q9ULF5 831 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 PLAGL1Q9UM63 463 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 MRPS18BQ9Y676 258 aaKnown RBP17.12■□□□□ 0.33
COL7A1-205ENST00000465238 NAV2Q8IVL1 2488 aa17.12■□□□□ 0.33
COL7A1-205ENST00000465238 MATN2O00339 956 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 POLR2CP19387 275 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms