RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ARSFP54793 590 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 HPCAP84074 193 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ARF5P84085 180 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 HKDC1Q2TB90 917 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 USP39Q53GS9 565 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 LY6G5CQ5SRR4 150 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ZDHHC20Q5W0Z9 365 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TEX26Q8N6G2 289 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PHF10Q8WUB8 498 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 SLC22A12Q96S37 553 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TEX12Q9BXU0 123 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 AASDHPPTQ9NRN7 309 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 VPS29Q9UBQ0 182 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 OAS3Q9Y6K5 1087 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 SCAMP1O15126 338 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 ERAL1O75616 437 aaKnown RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 MMP2P08253 660 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 POU2F1P14859 743 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 GTDC1Q4AE62 458 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 OGFOD2Q6N063 350 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 LIMS2Q7Z4I7 341 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 PROX1Q92786 737 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 OTUB1Q96FW1 271 aaPredicted RBP11.35□□□□□ -0.59
NPHP4-204ENST00000460696 BBS4Q96RK4 519 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 OR2AG1Q9H205 316 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 EPS8L2Q9H6S3 715 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 GIMAP4Q9NUV9 329 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TBC1D14Q9P2M4 693 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 DEC1Q9P2X7 70 aa11.35□□□□□ -0.59
NPHP4-204ENST00000460696 TOR1BO14657 336 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 FOXD2O60548 495 aaPredicted RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 CREG1O75629 220 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 DLGAP3O95886 979 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TGFB1P01137 390 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 OPN1SWP03999 348 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ASLP04424 464 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 FABP3P05413 133 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 RPS17P08708 135 aaKnown RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 BCKDHAP12694 445 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TYRP14679 529 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ENGP17813 658 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 MYBPC1Q00872 1141 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 HACD2Q6Y1H2 254 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 AHSA2Q719I0 299 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TRIM74Q86UV6 250 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 FUNDC1Q8IVP5 155 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 C1orf52Q8N6N3 182 aaKnown RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TSPEARQ8WU66 669 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 OVCA2Q8WZ82 227 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TOX2Q96NM4 488 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 CLSTN3Q9BQT9 956 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 DUSP26Q9BV47 211 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TRIM45Q9H8W5 580 aaPredicted RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TIMMDC1Q9NPL8 285 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 RAD18Q9NS91 495 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 USP22Q9UPT9 525 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ASB3Q9Y575 518 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 AHCTF1Q8WYP5 2266 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 A0A1W2PPW3 197 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 NADKO95544 446 aaPredicted RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 DBTP11182 482 aaKnown RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 HSD17B1P14061 328 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ELK4P28324 431 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 PPP2R1BP30154 601 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 RFC2P35250 354 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 NTHL1P78549 312 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 SGCGQ13326 291 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 CHPFQ8IZ52 775 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 KRT78Q8N1N4 520 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 VPS35Q96QK1 796 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 REXO4Q9GZR2 422 aaKnown RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 EPB41L1Q9H4G0 881 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 DOLKQ9UPQ8 538 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 RUVBL1Q9Y265 456 aaKnown RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 PCDHGA11Q9Y5H2 935 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 C7orf72A4D263 438 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 FAM220BPB1ANY3 271 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 GNAO1P09471 354 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 PTPN2P17706 415 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ACRV1P26436 265 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 FMO3P31513 532 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 BNIP3Q12983 259 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 MEP1AQ16819 746 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 DGUOKQ16854 277 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ANXA8L1Q5VT79 327 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 XKR5Q6UX68 686 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 DSG4Q86SJ6 1040 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 ZFAND4Q86XD8 727 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 PHYKPLQ8IUZ5 450 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 PHC3Q8NDX5 983 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 PIK3C3Q8NEB9 887 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 EZH1Q92800 747 aaPredicted RBP11.34□□□□□ -0.59
NPHP4-204ENST00000460696 TOR3AQ9H497 397 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 MARCH5Q9NX47 278 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 GPR45Q9Y5Y3 372 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 BACE2Q9Y5Z0 518 aa11.34□□□□□ -0.59
NPHP4-204ENST00000460696 H3BNH8 94 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 EEDO75530 441 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MATN4O95460 622 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 DGKGP49619 791 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms