RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OR2L8Q8NGY9 312 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 MAGEC3Q8TD91 643 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 SKA2Q8WVK7 121 aaPredicted RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 FAR1Q8WVX9 515 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 RAD51AP1Q96B01 352 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 THOC3Q96J01 351 aaKnown RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 FOPNLQ96NB1 174 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 SELENOSQ9BQE4 189 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 ZBTB20Q9HC78 741 aaPredicted RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 SLC6A20Q9NP91 592 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 SLC22A11Q9NSA0 550 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 MED13Q9UHV7 2174 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 OSGIN2Q9Y236 505 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 KLHL20Q9Y2M5 609 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 USP9XQ93008 2570 aaPredicted RBP12.74□□□□□ -0.37
HMGB3-204ENST00000448905 A0A1B0GUH1 482 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 RASGRF2O14827 1237 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 CNOT3O75175 753 aaKnown RBP12.74□□□□□ -0.37
HMGB3-204ENST00000448905 GPC4O75487 556 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 GOT2P00505 430 aaKnown RBP12.74□□□□□ -0.37
HMGB3-204ENST00000448905 MYBL2P10244 700 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 FDFT1P37268 417 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 TTPAP49638 278 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 KIF5AQ12840 1032 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 NAA30Q147X3 362 aaPredicted RBP12.74□□□□□ -0.37
HMGB3-204ENST00000448905 NAA25Q14CX7 972 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 PRMT9Q6P2P2 845 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 KIRREL2Q6UWL6 708 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 ISLR2Q6UXK2 745 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 KIAA1328Q86T90 577 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 FAM20CQ8IXL6 584 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 GRHL3Q8TE85 626 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 PEX13Q92968 403 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 CNDP1Q96KN2 507 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 PANX3Q96QZ0 392 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 FRMD8P1Q9BZ68 369 aaPredicted RBP12.74□□□□□ -0.37
HMGB3-204ENST00000448905 ZNF304Q9HCX3 659 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 CDC14AQ9UNH5 594 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 NOVA2Q9UNW9 492 aaKnown RBP12.74□□□□□ -0.37
HMGB3-204ENST00000448905 FAM169AQ9Y6X4 670 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 SHANK1Q9Y566 2161 aa12.74□□□□□ -0.37
HMGB3-204ENST00000448905 DYTNA2CJ06 578 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 HYKKA2RU49 373 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 RCCD1A6NED2 376 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 SOWAHDA6NJG2 315 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 MASP2O00187 686 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 SOCS6O14544 535 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 PRMT5O14744 637 aaPredicted RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 PFDN6O15212 129 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 SUN1O94901 812 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 SLCO2B1O94956 709 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 CXCR2P25025 360 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 AOAHP28039 575 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 PEBP1P30086 187 aaKnown RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 CCNFP41002 786 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 WASHC2DQ5SRD0 308 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 RPUSD3Q6P087 351 aaKnown RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 FAM180AQ6UWF9 173 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 KBTBD2Q8IY47 623 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 BCORP1Q8N888 145 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 LRRC57Q8N9N7 239 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 LMNTD1Q8N9Z9 388 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 LINC01555Q8NAE3 123 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 OR13J1Q8NGT2 312 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 SLC35B2Q8TB61 432 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 INPP5DQ92835 1189 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 MIEF2Q96C03 454 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 CRB3Q9BUF7 120 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 SOX17Q9H6I2 414 aaPredicted RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 ETNK1Q9HBU6 452 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 ENAMQ9NRM1 1142 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 ZNF282Q9UDV7 671 aaPredicted RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 ZC3H7BQ9UGR2 993 aaKnown RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 TTC7AQ9ULT0 858 aaPredicted RBP12.73□□□□□ -0.37
HMGB3-204ENST00000448905 ZNF148Q9UQR1 794 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 HS3ST3B1Q9Y662 390 aa12.73□□□□□ -0.37
HMGB3-204ENST00000448905 NOTCH2Q04721 2471 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 GRID2IPA4D2P6 1211 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 FITM1A5D6W6 292 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 VSTM2BA6NLU5 285 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 AP3B1O00203 1094 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 PRPF4O43172 522 aaKnown RBP eCLIP12.72□□□□□ -0.37
HMGB3-204ENST00000448905 HNRNPRO43390 633 aaKnown RBP12.72□□□□□ -0.37
HMGB3-204ENST00000448905 NDUFS3O75489 264 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 USP1O94782 785 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 HPP00738 406 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 IFNB1P01574 187 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 ERVK-10P10266 1014 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 ACPPP15309 386 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 FDXRP22570 491 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 GCGRP47871 477 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 OR1D4P47884 311 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 GDF10P55107 478 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 FOXL2P58012 376 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 VSX2P58304 361 aaPredicted RBP12.72□□□□□ -0.37
HMGB3-204ENST00000448905 KLF1Q13351 362 aaPredicted RBP12.72□□□□□ -0.37
HMGB3-204ENST00000448905 LINC00696Q6ZRV3 163 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 SHISA6Q6ZSJ9 500 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 OTOAQ7RTW8 1153 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 SDCCAG8Q86SQ7 713 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms