RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 CHP2O43745 196 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 POP7O75817 140 aaKnown RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 SNAI1O95863 264 aaPredicted RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 GPR89BP0CG08 455 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 SYN1P17600 705 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 NTSR1P30989 418 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 NFKB2Q00653 900 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 RPL6Q02878 288 aaKnown RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 TAF5Q15542 800 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 FRG2Q64ET8 278 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 FRRS1Q6ZNA5 592 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 RCN3Q96D15 328 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ERLEC1Q96DZ1 483 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 CDKN2AIPNLQ96HQ2 116 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 FRG2BQ96QU4 278 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 DDX60Q8IY21 1712 aaKnown RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 GJE1A6NN92 205 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 WRBO00258 174 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 PLIN3O60664 434 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 PRAMEF11O60813 436 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 RBMXL2O75526 392 aaKnown RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 AK1P00568 194 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 HEXBP07686 556 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ANXA8P13928 327 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 HNF1BP35680 557 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 CACNA2D1P54289 1103 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 FCHO2Q0JRZ9 810 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ARL9Q6T311 187 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 CLVS1Q8IUQ0 354 aaPredicted RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 TSGA13Q96PP4 275 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 DUSP23Q9BVJ7 150 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ALG2Q9H553 416 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ERVK-5Q9HDB9 667 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 NRXN3Q9Y4C0 1643 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 A0A1W2PRB8 838 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 GP1BBP13224 206 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 GALNT2Q10471 571 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 NPTX1Q15818 432 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 TMEM17Q86X19 198 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ZNF440Q8IYI8 595 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 PCDH19Q8TAB3 1148 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 GEMIN6Q8WXD5 167 aaKnown RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 TMEM209Q96SK2 561 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 RIOK2Q9BVS4 552 aaKnown RBP8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ATG10Q9H0Y0 220 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 MAP4K5Q9Y4K4 846 aa8.36□□□□□ -1.07
PTPN3-204ENST00000446349 ANKRD36CQ5JPF3 1778 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 LOC100506127A0A0U1RQW1 187 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 A0A0X1KG70 313 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 ACOT7O00154 380 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 TSPAN8P19075 237 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 IMPDH1P20839 514 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 ACVR2AP27037 513 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 TM4SF4P48230 202 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 ARCN1P48444 511 aaKnown RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 PGDP52209 483 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 RPS3AP61247 264 aaKnown RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 PITRM1Q5JRX3 1037 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 SLC30A6Q6NXT4 461 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 B3GNT6Q6ZMB0 384 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 UXS1Q8NBZ7 420 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 LENG1Q96BZ8 264 aaPredicted RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 TOX2Q96NM4 488 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 FAM120CQ9NX05 1096 aaKnown RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 ING4Q9UNL4 249 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 FARS2O95363 451 aaKnown RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 DHFRP00374 187 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 HOXC13P31276 330 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 TCTE1Q5JU00 501 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 C9orf43Q8TAL5 461 aaPredicted RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 GIPC3Q8TF64 312 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 KIAA1191Q96A73 305 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 TMEM138Q9NPI0 162 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 SCGB2A1O75556 95 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 CLCN4P51793 760 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 PER3P56645 1201 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 RPS24P62847 133 aaKnown RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 RAB33AQ14088 237 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 SLBPQ14493 270 aaKnown RBP eCLIP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 UNC5DQ6UXZ4 953 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 BNIPLQ7Z465 357 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 ARL10Q8N8L6 244 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 SLC5A11Q8WWX8 675 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 PLGRKTQ9HBL7 147 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 EHD3Q9NZN3 535 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 MED31Q9Y3C7 131 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 DNMT3AQ9Y6K1 912 aaPredicted RBP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 HYKKA2RU49 373 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 LCHNA4D1U4 455 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 SMNDC1O75940 238 aaKnown RBP eCLIP8.35□□□□□ -1.07
PTPN3-204ENST00000446349 MARCKSL1P49006 195 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 CASP9P55211 416 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 QPRTQ15274 297 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 RPL13AP3Q6NVV1 102 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 SCAMP5Q8TAC9 235 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 PPP1R13LQ8WUF5 828 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 DERL2Q9GZP9 239 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 EPB41L1Q9H4G0 881 aa8.35□□□□□ -1.07
PTPN3-204ENST00000446349 NOL6Q9H6R4 1146 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms