RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GGT5P36269 586 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 ALDH18A1P54886 795 aaKnown RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 CCL7P80098 99 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 E2F1Q01094 437 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 TAP2Q03519 686 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 NAE1Q13564 534 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 TSTA3Q13630 321 aaPredicted RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 FASTKQ14296 549 aaKnown RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 KIR2DS3Q14952 304 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 CLPPQ16740 277 aaPredicted RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 PFKFB4Q16877 469 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 ZYG11AQ6WRX3 759 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 C2orf73Q8N5S3 287 aaPredicted RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 LMNTD1Q8N9Z9 388 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 LINC01555Q8NAE3 123 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 ARMC2Q8NEN0 867 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 OR56A3Q8NH54 315 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 WDR48Q8TAF3 677 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 NCSTNQ92542 709 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 SLC22A18Q96BI1 424 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 CCDC126Q96EE4 140 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 RAB33BQ9H082 229 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 ABCG4Q9H172 646 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 LRRN3Q9H3W5 708 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 MED4Q9NPJ6 270 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 OGFRQ9NZT2 677 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 TMEM120BA0PK00 339 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 GSAPA4D1B5 854 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 ISM1B1AKI9 464 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 TAPBPO15533 448 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 DLX3O60479 287 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 RFPL3O75679 317 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 IPO13O94829 963 aaKnown RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 RPLP0P05388 317 aaKnown RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 OAS2P29728 719 aaKnown RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 CAPZBP47756 277 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 SLC18A1P54219 525 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 SETDB1Q15047 1291 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 NKAIN2Q5VXU1 208 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 CAPN13Q6MZZ7 669 aaPredicted RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 USP53Q70EK8 1073 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 RAB44Q7Z6P3 723 aaPredicted RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 SLC22A9Q8IVM8 553 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 KLHDC8AQ8IYD2 350 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 LRRC56Q8IYG6 542 aaPredicted RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 PTGR2Q8N8N7 351 aaPredicted RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 PPFIBP2Q8ND30 876 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 UBTD2Q8WUN7 234 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 RSC1A1Q92681 617 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 PHF21BQ96EK2 531 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 MED8Q96G25 268 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 ZDHHC12Q96GR4 267 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 DPYSL5Q9BPU6 564 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 TWSG1Q9GZX9 223 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 PCBD2Q9H0N5 130 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 CCDC177Q9NQR7 707 aaPredicted RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 ACTR10Q9NZ32 417 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 EPHA6Q9UF33 1036 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 PCDHGA1Q9Y5H4 931 aa15.26■□□□□ 0.03
USP40-206ENST00000443711 TNPO3Q9Y5L0 923 aaKnown RBP15.26■□□□□ 0.03
USP40-206ENST00000443711 A0A1W2PPV9 198 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 A0A1W2PQM1 296 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 A8MT66 165 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 G3V2L1 256 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 STX16-NPEPL1H3BU86 382 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 STX16O14662 325 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 PRICKLE3O43900 615 aaPredicted RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 STK16O75716 305 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 CPNE6O95741 557 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 CDK4P11802 303 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 CEACAM1P13688 526 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 SLC6A12P48065 614 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 HSPA7P48741 367 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 TBPL1P62380 186 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 NFKB2Q00653 900 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 MPP2Q14168 576 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 RSPO4Q2I0M5 234 aaPredicted RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 ZXDCQ2QGD7 858 aaPredicted RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 C18orf21Q32NC0 220 aaPredicted RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 PTCHD3Q3KNS1 767 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 CCDC157Q569K6 752 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 THEMIS2Q5TEJ8 643 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 METTL2BQ6P1Q9 378 aaKnown RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 WDR74Q6RFH5 385 aaPredicted RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 SUSD1Q6UWL2 747 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 ALYREFQ86V81 257 aaKnown RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 TAX1BP1Q86VP1 789 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 PLXDC1Q8IUK5 500 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 ANKRD42Q8N9B4 389 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 GFM1Q96RP9 751 aaKnown RBP15.25■□□□□ 0.03
USP40-206ENST00000443711 MIPEPQ99797 713 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 SELENOSQ9BQE4 189 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 TMEM79Q9BSE2 394 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 SGPP1Q9BX95 441 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 CD244Q9BZW8 370 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 ZMYND15Q9H091 742 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 SYNDIG1Q9H7V2 258 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 ABCF3Q9NUQ8 709 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 SPHK1Q9NYA1 384 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 NKIRAS1Q9NYS0 192 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms