RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 NUDT13Q86X67 352 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 KCT2Q8NC54 265 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TMIEQ8NEW7 156 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 OR2L2Q8NH16 312 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 LMX1AQ8TE12 382 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF285Q96NJ3 590 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 LGMNQ99538 433 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TLR9Q9NR96 1032 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RIMBP3CA6NJZ7 1639 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RIMBP3BA6NNM3 1639 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RIMBP3Q9UFD9 1639 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ADAMTS13Q76LX8 1427 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 A8MUI8 341 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 BTNL10A8MVZ5 291 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 KCNU1A8MYU2 1149 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PLSCR1O15162 318 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 LYPLA1O75608 230 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GADD45GO95257 159 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 INHAP05111 366 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ACSL1P33121 698 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TOB1P50616 345 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 AKR1D1P51857 326 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MZT1Q08AG7 82 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CHIT1Q13231 466 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 EFR3AQ14156 821 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ABRAXAS2Q15018 415 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GPR107Q5VW38 600 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GLYATQ6IB77 296 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF662Q6ZS27 426 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GPR65Q8IYL9 337 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ALDH16A1Q8IZ83 802 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TP53INP1Q96A56 240 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 P2RY11Q96G91 374 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 LRRC19Q9H756 370 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ELAC1Q9H777 363 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TIMMDC1Q9NPL8 285 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RAB26Q9ULW5 256 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MAFFQ9ULX9 164 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 LOXHD1Q8IVV2 1947 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 IFT172Q9UG01 1749 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ANKRD63C9JTQ0 380 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 E7EQ34 232 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 DLG4P78352 724 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 UBAP2LQ14157 1087 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RHEBQ15382 184 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 IFI44LQ53G44 452 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 KIAA0895LQ68EN5 471 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SPAG16Q8N0X2 631 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GSTCDQ8NEC7 633 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 OR52E4Q8NGH9 312 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CEP76Q8TAP6 659 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GATAD2BQ8WXI9 593 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 COPS5Q92905 334 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ZC3H10Q96K80 434 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GORASP1Q9BQQ3 440 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 C11orf16Q9NQ32 467 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SPATA6Q9NWH7 488 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TLL2Q9Y6L7 1015 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 U3KQV3 271 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 EVPLQ92817 2033 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 NCANO14594 1321 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 hCG_1818297A0A087WSY0 165 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 FAM237BA0A1B0GVD1 139 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 C2orf72A6NCS6 295 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PAPSS1O43252 624 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SASH3O75995 380 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RCBTB2O95199 551 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ENTPD1P49961 510 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 POLR2HP52434 150 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PLA2G16P53816 162 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 DRG2P55039 364 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RPS15P62841 145 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CAPSQ13938 189 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ELOCQ15369 112 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CDKAL1Q5VV42 579 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 LIX1LQ8IVB5 337 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 NCSTNQ92542 709 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CEP295NLQ96MC4 621 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TPK1Q9H3S4 243 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MTMR10Q9NXD2 777 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TMA7Q9Y2S6 64 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TFECO14948 347 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MATN3O15232 486 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MSI1O43347 362 aaKnown RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 AP2A1O95782 977 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SCGB1D2O95969 90 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GPIP06744 558 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PFKLP17858 780 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 GSTM3P21266 225 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 EPHA3P29320 983 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 BMP8BP34820 402 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MAGEA12P43365 314 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 RAB28P51157 221 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CLCNKBP51801 687 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 HSD17B7P56937 341 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 TARDBPQ13148 414 aaKnown RBP eCLIP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 DSG2Q14126 1118 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 SYT16Q17RD7 645 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 BMP8AQ7Z5Y6 402 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 IQCHQ86VS3 1027 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms