RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 IGLV3-25P01717 112 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 DNTTP04053 509 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 FYNP06241 537 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 SRPRAP08240 638 aaKnown RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 PDGFRAP16234 1089 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 SLC8A1P32418 973 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 DHPSP49366 369 aaPredicted RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 KLHL30Q0D2K2 578 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 ABHD18Q0P651 414 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 CBFBQ13951 182 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 ZNF234Q14588 700 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 LARS2Q15031 903 aaKnown RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 TBC1D25Q3MII6 688 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 TDRD12Q587J7 1177 aaKnown RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 FAM133BQ5BKY9 247 aaKnown RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 MTFR2Q6P444 385 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 DSG4Q86SJ6 1040 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 KIAA2013Q8IYS2 634 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 KDM1BQ8NB78 822 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 ST8SIA4Q92187 359 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 PGAP3Q96FM1 320 aaPredicted RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 SIPA1Q96FS4 1042 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 PIWIL1Q96J94 861 aaKnown RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 NPY6RQ99463 290 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 RETREG1Q9H6L5 497 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 SLC22A11Q9NSA0 550 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 NOCTQ9UK39 431 aaKnown RBP6.34□□□□□ -1.39
USP40-202ENST00000409945 PACSIN3Q9UKS6 424 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 SCML1Q9UN30 329 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 NCKAP1Q9Y2A7 1128 aa6.34□□□□□ -1.39
USP40-202ENST00000409945 FAM186AA6NE01 2351 aa6.34□□□□□ -1.4
USP40-202ENST00000409945 GOLGA6L7A0A1B0GV03 622 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CCDC151A5D8V7 595 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 FAM90A7PA6NKC0 464 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 FAM90A22PA8MWA6 464 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 FAM90A12PA8MX19 464 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 FAM90A23PA8MXZ1 464 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PEX12O00623 359 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CNTN5O94779 1100 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 EPN2O95208 641 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 MYBL1P10243 752 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 GNSP15586 552 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ABCD3P28288 659 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 HLA-FP30511 346 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CXCR3P49682 368 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 AIF1P55008 147 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CDH4P55283 916 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ECT2LQ008S8 904 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CREB5Q02930 508 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ZBTB16Q05516 673 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 DMWDQ09019 674 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 TBRG1Q3YBR2 411 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ARL13AQ5H913 290 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 WDR45BQ5MNZ6 344 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 NAPEPLDQ6IQ20 393 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 C1orf122Q6ZSJ8 110 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 STRADAQ7RTN6 431 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PHF13Q86YI8 300 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 RFX6Q8HWS3 928 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 LRRC8AQ8IWT6 810 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CCAR2Q8N163 923 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 CEP76Q8TAP6 659 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 GANCQ8TET4 914 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 SLC20A1Q8WUM9 679 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ZUFSPQ96AP4 578 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 C1orf74Q96LT6 269 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ZNF347Q96SE7 839 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PAIP1Q9H074 479 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 NOD2Q9HC29 1040 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 MRPL47Q9HD33 250 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 PARVAQ9NVD7 372 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 VANGL2Q9ULK5 521 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PYCARDQ9ULZ3 195 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 SCINQ9Y6U3 715 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 TARSL2A2RTX5 802 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 LRRC3CA6NJW4 275 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 LRRC53A6NM62 1247 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 TARM1B6A8C7 271 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 RNF8O76064 485 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ALDOAP04075 364 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 RHOCP08134 193 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 GZMAP12544 262 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 UNGP13051 313 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 GABRG2P18507 467 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 GPD1P21695 349 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 MATN1P21941 496 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 HOXD12P35452 270 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 P2RY2P41231 377 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PTPN9P43378 593 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ATXN3P54252 364 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 GSCP56915 257 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 RPS24P62847 133 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 TBX2Q13207 712 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 SRSF5Q13243 272 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 CDO1Q16878 200 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ZXDCQ2QGD7 858 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 PLK5Q496M5 336 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ACCSLQ4AC99 568 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 LYSMD4Q5XG99 296 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PMS2CLQ68D20 193 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms