RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 SSTR4P31391 388 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 POLD2P49005 469 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 HNRNPFP52597 415 aaKnown RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 TUBA3CQ13748 450 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 NKG7Q16617 165 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CYP27C1Q4G0S4 372 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 NPAS4Q8IUM7 802 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 NLGN4XQ8N0W4 816 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 STX19Q8N4C7 294 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 AMER2Q8N7J2 671 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 LEMD2Q8NC56 503 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 RHOXF1Q8NHV9 184 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 MYLIPQ8WY64 445 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 KCNC2Q96PR1 638 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 YME1L1Q96TA2 773 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 ZBTB18Q99592 522 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 UGT2B28Q9BY64 529 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 VAPAQ9P0L0 249 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 TRHDEQ9UKU6 1024 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 SAMHD1Q9Y3Z3 626 aaKnown RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 GPR39O43194 453 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TMCC2O75069 709 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PRKACBP22694 351 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 CYP4F8P98187 520 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 MS4A13Q5J8X5 152 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PM20D1Q6GTS8 502 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 MFSD4AQ8N468 514 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 RANGRFQ9HD47 186 aaPredicted RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 UXTQ9UBK9 157 aaPredicted RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PCDHA9Q9Y5H5 950 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 CCDC162PA2VCL2 907 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 ATF6P18850 670 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TXNDC8Q6A555 127 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PTCD2Q8WV60 388 aaKnown RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 FKBP10Q96AY3 582 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 SLC22A12Q96S37 553 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 CGREF1Q99674 301 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 RBM4BQ9BQ04 359 aaKnown RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 KIFC1Q9BW19 673 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 RBM4Q9BWF3 364 aaKnown RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TRIM54Q9BYV2 358 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 CERS4Q9HA82 394 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 NDUFS3O75489 264 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 GLP2RO95838 553 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 CYP11A1P05108 521 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 SLC2A3P11169 496 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 GDF5P43026 501 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PAFAH1B3Q15102 231 aaKnown RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 ADHFE1Q8IWW8 467 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 HOMEZQ8IX15 550 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 KRTCAP2Q8N6L1 136 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TTC29Q8NA56 475 aaPredicted RBP12.66□□□□□ -0.38
PTPRN-202ENST00000409251 MUL1Q969V5 352 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 SERPINB11Q96P15 392 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TSSK3Q96PN8 268 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PHOX2BQ99453 314 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 PKMYT1Q99640 499 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TLR9Q9NR96 1032 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 AASDHPPTQ9NRN7 309 aa12.66□□□□□ -0.38
PTPRN-202ENST00000409251 TRIOO75962 3097 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 PRKCAP17252 672 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 RPL34P49207 117 aaKnown RBP12.65□□□□□ -0.38
PTPRN-202ENST00000409251 TGM4P49221 684 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 GEMP55040 296 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 PAMR1Q6UXH9 720 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 GDPD3Q7L5L3 318 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 ARHGAP12Q8IWW6 846 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 PARP16Q8N5Y8 322 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 ARPC5LQ9BPX5 153 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 CATSPERBQ9H7T0 1116 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 MAGEL2Q9UJ55 1249 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 SEC22BO75396 215 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 MSH3P20585 1137 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 SGSHP51688 502 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 TIGD6Q17RP2 521 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 B3GNT8Q7Z7M8 397 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 HID1Q8IV36 788 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 EFHD2Q96C19 240 aaPredicted RBP12.65□□□□□ -0.38
PTPRN-202ENST00000409251 UROC1Q96N76 676 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 TDRD1Q9BXT4 1180 aaKnown RBP12.65□□□□□ -0.38
PTPRN-202ENST00000409251 TM6SF2Q9BZW4 377 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 TLR8Q9NR97 1041 aaKnown RBP12.65□□□□□ -0.38
PTPRN-202ENST00000409251 KRT84Q9NSB2 600 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 RABL2BQ9UNT1 228 aa12.65□□□□□ -0.38
PTPRN-202ENST00000409251 A8MUA0 341 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TTC34A8MYJ7 566 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 H0YAE9 185 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 CXCR6O00574 342 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ATF4P18848 351 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 LIPAP38571 399 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 EIF2DP41214 584 aaKnown RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SLC15A1P46059 708 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MLLT6P55198 1093 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ALDH6A1Q02252 535 aaKnown RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TSTA3Q13630 321 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 DDX39BQ13838 428 aaKnown RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SPANXN4Q5MJ08 99 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 CES5AQ6NT32 575 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 VTCN1Q7Z7D3 282 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 PEX5LQ8IYB4 626 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms