RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KLHL3Q9UH77 587 aa28.37■■■□□ 2.13
USP42-202ENST00000404008 SNRNP200O75643 2136 aaKnown RBP28.36■■■□□ 2.13
USP42-202ENST00000404008 PCM1Q15154 2024 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 A0A1W2PPV9 198 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 PRICKLE3O43900 615 aaPredicted RBP28.36■■■□□ 2.13
USP42-202ENST00000404008 PRDX3P30048 256 aaKnown RBP28.36■■■□□ 2.13
USP42-202ENST00000404008 INHBCP55103 352 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 ISXQ2M1V0 245 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 TECRLQ5HYJ1 363 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 CROCCP2Q86T23 111 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 GALNT15Q8N3T1 639 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 CHCHD4Q8N4Q1 142 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 ATL1Q8WXF7 558 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 SMPDL3AQ92484 453 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 SLC22A18Q96BI1 424 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 CCDC74BQ96LY2 380 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 OR2A14Q96R47 310 aa28.36■■■□□ 2.13
USP42-202ENST00000404008 ADAMTS20P59510 1910 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 ISM1B1AKI9 464 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 KIF1CO43896 1103 aaKnown RBP28.35■■■□□ 2.13
USP42-202ENST00000404008 CSO75390 466 aaKnown RBP28.35■■■□□ 2.13
USP42-202ENST00000404008 ANXA5P08758 320 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 UGT2B7P16662 529 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 CCKBRP32239 447 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 ZXDCQ2QGD7 858 aaPredicted RBP28.35■■■□□ 2.13
USP42-202ENST00000404008 SNAP47Q5SQN1 464 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 PHF19Q5T6S3 580 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 SPESP1Q6UW49 350 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 TMPRSS7Q7RTY8 843 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 EGFL8Q99944 293 aa28.35■■■□□ 2.13
USP42-202ENST00000404008 TLCD2A6NGC4 264 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 RGS16O15492 202 aaPredicted RBP28.34■■■□□ 2.13
USP42-202ENST00000404008 GSTA1P08263 222 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 KRT4P19013 534 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 HNMTP50135 292 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 TRA2AQ13595 282 aaKnown RBP eCLIP28.34■■■□□ 2.13
USP42-202ENST00000404008 CDKL4Q5MAI5 379 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 SUSD1Q6UWL2 747 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 PRSS42Q7Z5A4 293 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 PDPRQ8NCN5 879 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 EXT2Q93063 718 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 ZBTB9Q96C00 473 aa28.34■■■□□ 2.13
USP42-202ENST00000404008 NCF1BA6NI72 391 aaPredicted RBP28.33■■■□□ 2.13
USP42-202ENST00000404008 SYCE1LA8MT33 242 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 NCF1CA8MVU1 366 aaPredicted RBP28.33■■■□□ 2.13
USP42-202ENST00000404008 TOX3O15405 576 aaPredicted RBP28.33■■■□□ 2.13
USP42-202ENST00000404008 RBP1P09455 135 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 ANKRD34CP0C6C1 535 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 NCF1P14598 390 aaPredicted RBP28.33■■■□□ 2.13
USP42-202ENST00000404008 JUPP14923 745 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 OAS2P29728 719 aaKnown RBP28.33■■■□□ 2.13
USP42-202ENST00000404008 TBPL1P62380 186 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 SLC18A2Q05940 514 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 SLC5A12Q1EHB4 618 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 ARHGAP22Q7Z5H3 698 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 CARFQ8N187 725 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 C4orf33Q8N1A6 199 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 RHBDF1Q96CC6 855 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 SCYL1Q96KG9 808 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 PPM1MQ96MI6 270 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 MAP3K3Q99759 626 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 PITPNM3Q9BZ71 974 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 ATG10Q9H0Y0 220 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 NUDT4Q9NZJ9 180 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 CD274Q9NZQ7 290 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 SEMA5BQ9P283 1151 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 XPR1Q9UBH6 696 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 DCDC2Q9UHG0 476 aa28.33■■■□□ 2.13
USP42-202ENST00000404008 TMX2-CTNND1H3BSU7 103 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 UBXN8O00124 270 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 RASSF9O75901 435 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 PSMB5P28074 263 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 LSSP48449 732 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 TARDBPQ13148 414 aaKnown RBP eCLIP28.32■■■□□ 2.124e-6■■□□□ 11.5
USP42-202ENST00000404008 CACHD1Q5VU97 1274 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 HDXQ7Z353 690 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 SRRM1Q8IYB3 904 aaKnown RBP28.32■■■□□ 2.12
USP42-202ENST00000404008 RCBTB1Q8NDN9 531 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 OR2A1Q8NGT9 310 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 OR56A3Q8NH54 315 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 MED8Q96G25 268 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 MRPL57Q9BQC6 102 aaKnown RBP28.32■■■□□ 2.12
USP42-202ENST00000404008 CCDC177Q9NQR7 707 aaPredicted RBP28.32■■■□□ 2.12
USP42-202ENST00000404008 C1GALT1Q9NS00 363 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 TMEM216Q9P0N5 145 aa28.32■■■□□ 2.12
USP42-202ENST00000404008 FAM149AA5PLN7 773 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 A8MU76 341 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 SUPT3HB4E1H0 165 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 GLRA3O75311 464 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 SUPT3HO75486 399 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 MTHFD2P13995 350 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 RPA3P35244 121 aaPredicted RBP28.31■■■□□ 2.12
USP42-202ENST00000404008 FOXC1Q12948 553 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 NAE1Q13564 534 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 TSTA3Q13630 321 aaPredicted RBP28.31■■■□□ 2.12
USP42-202ENST00000404008 TCAIMQ8N3R3 496 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 GRAMD1AQ96CP6 724 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 PGM2Q96G03 612 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 SGPP1Q9BX95 441 aa28.31■■■□□ 2.12
USP42-202ENST00000404008 PCDHB11Q9Y5F2 797 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms