RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SNX10Q9Y5X0 201 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 NEMP2A6NFY4 417 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PDCD5O14737 125 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 DNASE1L1P49184 302 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 KHKP50053 298 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CLCNKBP51801 687 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 FBXO43Q4G163 708 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PDE12Q6L8Q7 609 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CFAP206Q8IYR0 622 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 STON2Q8WXE9 905 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 KAT2AQ92830 837 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ESAMQ96AP7 390 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CIDECQ96AQ7 238 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PLD4Q96BZ4 506 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CGREF1Q99674 301 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 MFSD1Q9H3U5 465 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 FZD8Q9H461 694 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 TMLHEQ9NVH6 421 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 NKX1-2Q9UD57 310 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PADI3Q9ULW8 664 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 MYBPHLA2RUH7 354 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 C5orf51A6NDU8 294 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 YJEFN3A6XGL0 299 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ERP29P30040 261 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 MADCAM1Q13477 382 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 UAP1L1Q3KQV9 507 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CYP2U1Q7Z449 544 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 CPNE8Q86YQ8 564 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ASCC1Q8N9N2 400 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 ZMIZ2Q8NF64 920 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PIGKQ92643 395 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 MYOCQ99972 504 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 GTF2IRD1Q9UHL9 959 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 COLEC10Q9Y6Z7 277 aa10.05□□□□□ -0.8
LIMCH1-203ENST00000396595 PTPRJQ12913 1337 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 IGKV6D-41A0A0C4DH26 115 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 A8MT66 165 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PLSCR1O15162 318 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PI15O43692 258 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SSX5O60225 188 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PSKH1P11801 424 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 KLF1Q13351 362 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 KCNJ11Q14654 390 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 GPALPP1Q8IXQ4 340 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 NAT16Q8N8M0 369 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CHST4Q8NCG5 386 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TCTEX1D2Q8WW35 142 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 DPF3Q92784 378 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 COMMD4Q9H0A8 199 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 HIPK3Q9H422 1215 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 THUMPD1Q9NXG2 353 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CPSF4LA6NMK7 179 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CXCL14O95715 111 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CRYZL1O95825 349 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PIGRP01833 764 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 MYCLP1P12525 358 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 LAG3P18627 525 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CLCN4P51793 760 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 AP2S1P53680 142 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CD83Q01151 205 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 RHDQ02161 417 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 RPL6Q02878 288 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 C2orf73Q8N5S3 287 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 OR10H4Q8NGA5 316 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CLEC4DQ8WXI8 215 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 DCSTAMPQ9H295 470 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 AKTIPQ9H8T0 292 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 ACTR3BQ9P1U1 418 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 COMMD3Q9UBI1 195 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TCRBV7S3A2A0A539 114 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 WRBO00258 174 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 FFAR2O15552 330 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PIK3CBP42338 1070 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CBLBQ13191 982 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 COLEC12Q5KU26 742 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 ZCCHC12Q6PEW1 402 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CHST9Q7L1S5 443 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 GPR135Q8IZ08 494 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SNIP1Q8TAD8 396 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF431Q8TF32 576 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 FATE1Q969F0 183 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC39A1Q9NY26 324 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 LRRC42Q9Y546 428 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3DA0A087WVF3 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3IA0A087WXS9 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3EA0A087X179 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3KA0A087X1G2 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3FA6NER0 549 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CXorf49A8MYA2 514 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3LB9A6J9 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 NPIPA7E9PJI5 369 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SNAPC5O75971 98 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PRAMEF12O95522 483 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC35G6P0C7Q6 338 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3HP0C7X1 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 NPIPA8P0DM63 369 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 ATXN1P54253 815 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 STXBP1P61764 594 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PPP3R1P63098 170 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 BNIP3Q12983 259 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms