RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MIOSQ9NXC5 875 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 GAGE2DQ9UEU5 116 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS13A-206ENST00000376646 TRIM77I1YAP6 450 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CCER2I3L3R5 266 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 DNM1LO00429 736 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 BUD23O43709 281 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 TSPAN1O60635 241 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 MED24O75448 989 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ZFAND5O76080 213 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 DUS4LO95620 317 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SCG2P13521 617 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PTAFRP25105 342 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 AZGP1P25311 298 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ITGA3P26006 1051 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 HOXC13P31276 330 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PCGF2P35227 344 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SLC6A12P48065 614 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 BMXP51813 675 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF75DP51815 510 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SNRPD1P62314 119 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 HSPB3Q12988 150 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 HYAL4Q2M3T9 481 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 VWC2Q2TAL6 325 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 HECTD3Q5T447 861 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 LCE3EQ5T5B0 92 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CYP4A22Q5TCH4 519 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 TRAT1Q6PIZ9 186 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SLC16A9Q7RTY1 509 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PLD3Q8IV08 490 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 FAM114A1Q8IWE2 563 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 THNSL1Q8IYQ7 743 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SPAG16Q8N0X2 631 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 TTC30BQ8N4P2 665 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 OR5M8Q8NGP6 311 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 MTERF3Q96E29 417 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SPDL1Q96EA4 605 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 GMPPAQ96IJ6 420 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 GBP5Q96PP8 586 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SYT11Q9BT88 431 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 GRPEL1Q9HAV7 217 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ATAD3AQ9NVI7 634 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 BARHL2Q9NY43 387 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ASIC3Q9UHC3 531 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 IL17BQ9UHF5 180 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 RNF150Q9ULK6 438 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF318Q5VUA4 2279 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 FEZF1A0PJY2 475 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 RECQL5O94762 991 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 OR2T7P0C7T2 308 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PLA2G4BP0C869 781 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 IFNAR1P17181 557 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CYP11B2P19099 503 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 TPD52P55327 224 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 RBPJQ06330 500 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 MFAP5Q13361 173 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PTPRCAPQ14761 206 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 NR1D2Q14995 579 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 C1QTNF12Q5T7M4 302 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CAVIN1Q6NZI2 390 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 KLC3Q6P597 504 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 DCLRE1AQ6PJP8 1040 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CORO6Q6QEF8 472 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 FAM198BQ6UWH4 519 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PPP1R21Q6ZMI0 780 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 MFN1Q8IWA4 741 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CEP57L1Q8IYX8 460 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 CCAR2Q8N163 923 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SLAMF9Q96A28 289 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ARSGQ96EG1 525 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 MOCOSQ96EN8 888 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 RTP3Q9BQQ7 232 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ADPGKQ9BRR6 497 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 TRAF4Q9BUZ4 470 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SLC25A23Q9BV35 468 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 WNT5BQ9H1J7 359 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PFDN4Q9NQP4 134 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ECHDC1Q9NTX5 307 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 C2orf42Q9NWW7 574 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 DPP3Q9NY33 737 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 NOL7Q9UMY1 257 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 EXOGQ9Y2C4 368 aaKnown RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 PADI2Q9Y2J8 665 aa1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SPIN1Q9Y657 262 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 SOS1Q07889 1333 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-206ENST00000376646 ARHGEF37A1IGU5 675 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ELOVL7A1L3X0 281 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 C15orf62A8K5M9 175 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 GPR137BO60478 399 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 RAF1P04049 648 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 DANCRP0C864 163 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 HSPA4P34932 840 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 GP5P40197 560 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 NPY4RP50391 375 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ACSM1Q08AH1 577 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 PNRC1Q12796 327 aaPredicted RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 SCARB2Q14108 478 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 SNAI3Q3KNW1 292 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 GRTP1Q5TC63 336 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 FAM109BQ6ICB4 259 aaPredicted RBP1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms