RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 A0A1W2PRQ8 180 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SDR42E2A6NKP2 422 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 A8MXE2 369 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ACOT7O00154 380 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RRP8O43159 456 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZBTB11O95625 1053 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 EPHX1P07099 455 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CBLP22681 906 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 IL13P35225 146 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 UGT2B10P36537 528 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MTHFRP42898 656 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 KIR3DL1P43629 444 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LSM12Q3MHD2 195 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ANKDD1AQ495B1 522 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OR2M7Q8NG81 312 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 KCTD13Q8WZ19 329 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 APBB2Q92870 758 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM41AQ96HV5 264 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SHDQ96IW2 340 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 S1PR3Q99500 378 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RAD9AQ99638 391 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ASB8Q9H765 288 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NANOGQ9H9S0 305 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DECR2Q9NUI1 292 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CLDND1Q9NY35 253 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LEMD3Q9Y2U8 911 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FAM96BQ9Y3D0 163 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 YIPF1Q9Y548 306 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TOP2BQ02880 1626 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 POLR3AO14802 1390 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PRAG1Q86YV5 1406 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 A0A0G2JLW4 131 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 E9PAM4 449 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 YY2O15391 372 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ATMINO43313 823 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PROM1O43490 865 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC19A2O60779 497 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LILRB3O75022 631 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF254O75437 659 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 AK1P00568 194 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 HEXBP07686 556 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PLEKP08567 350 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SNRPAP09012 282 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF728P0DKX0 622 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MUTP22033 750 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NRIP1P48552 1158 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 HERVK_113P63132 956 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ERVK-8P63133 956 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CLCQ05315 142 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TARDBPQ13148 414 aaKnown RBP eCLIP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MAPKAPK3Q16644 382 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ST7LQ8TDW4 575 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 GRHL3Q8TE85 626 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LRIG1Q96JA1 1093 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 YIPF4Q9BSR8 244 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ERVK-6Q9BXR3 956 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 USP36Q9P275 1121 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PAK5Q9P286 719 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHGA11Q9Y5H2 935 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TTC24A2A3L6 582 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 HBP1O60381 514 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 FUCA1P04066 466 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ALDOBP05062 364 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 GOT1P17174 413 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 F8A1P23610 371 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CPOXP36551 454 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ABRAXAS2Q15018 415 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 MAP1SQ66K74 1059 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM225Q6GV28 225 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SLC39A4Q6P5W5 647 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SLC22A9Q8IVM8 553 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ADHFE1Q8IWW8 467 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CRYBG2Q8N1P7 616 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF276Q8N554 614 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 FAM46DQ8NEK8 389 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 OR2AP1Q8NGE2 309 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 XAGE5Q8WWM1 108 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 TAAR8Q969N4 342 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 TCEAL4Q96EI5 215 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CELF6Q96J87 481 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 DMRTB1Q96MA1 342 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ASB16Q96NS5 453 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 TRIB1Q96RU8 372 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 AARSD1Q9BTE6 412 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SUCNR1Q9BXA5 334 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CELF4Q9BZC1 486 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SEMA6AQ9H2E6 1030 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ZCCHC3Q9NUD5 404 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 GPATCH2Q9NW75 528 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NCANO14594 1321 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ARHGEF10O15013 1369 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 CACNA1DQ01668 2161 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PPW3 197 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 ELOA3DA6NLF2 546 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 DUSP11O75319 330 aaKnown RBP4.55□□□□□ -1.68
SCN1A-202ENST00000375405 NIPSNAP2O75323 286 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 SEC24AO95486 1093 aa4.55□□□□□ -1.68
SCN1A-202ENST00000375405 DLDP09622 509 aaKnown RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms