RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 MSX1P28360 303 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 SPAM1P38567 509 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 KRT81Q14533 505 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 PPP2R5EQ16537 467 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CCDC122Q5T0U0 273 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CCDC183Q5T5S1 534 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 KDELC1Q6UW63 502 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 NEK10Q6ZWH5 1172 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 TAOK1Q7L7X3 1001 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 ZNF571Q7Z3V5 609 aaPredicted RBP8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 BIVMQ86UB2 503 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 KRTAP1-3Q8IUG1 177 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 MCATQ8IVS2 390 aaKnown RBP8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 RPRMLQ8N4K4 120 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CCNYQ8ND76 341 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 ANKRD20A12PQ8NF67 263 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 OR5AR1Q8NGP9 310 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CCDC110Q8TBZ0 833 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 STT3BQ8TCJ2 826 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CA5BP1Q8WTZ4 195 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 PHF10Q8WUB8 498 aaKnown RBP8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 NINJ1Q92982 152 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 SIGLEC12Q96PQ1 595 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 ZNF559Q9BR84 538 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CRB3Q9BUF7 120 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 ZCCHC2Q9C0B9 1178 aaKnown RBP8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 XPO4Q9C0E2 1151 aaKnown RBP8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 RNF32Q9H0A6 362 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 ALG2Q9H553 416 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 CUTCQ9NTM9 273 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 IRAK4Q9NWZ3 460 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 PLAGL1Q9UM63 463 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 PPT2Q9UMR5 302 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 NPIPA1Q9UND3 350 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 HEBP2Q9Y5Z4 205 aa8.09□□□□□ -1.11
HMGB1P39-201ENST00000366304 RTTNQ86VV8 2226 aa8.09□□□□□ -1.12
HMGB1P39-201ENST00000366304 CPAMD8Q8IZJ3 1885 aa8.09□□□□□ -1.12
HMGB1P39-201ENST00000366304 TLN2Q9Y4G6 2542 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 IGHV1-45A0A0A0MS14 117 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 A0A0J9YY10 115 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 A0A1W2PQ72 361 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 OR5H15A6NDH6 313 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 FAM90A27PA6NNH2 459 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 E9PLN8 166 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 NRP2O60462 931 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZRANB2O95218 330 aaKnown RBP eCLIP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 BMP10O95393 424 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 MSH3P20585 1137 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 MAGP20916 626 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 EEF1GP26641 437 aaKnown RBP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 AKT1P31749 480 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 CD68P34810 354 aaPredicted RBP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 GRIA3P42263 894 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 NR0B1P51843 470 aaKnown RBP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 DLX5P56178 289 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 FOLH1Q04609 750 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 EEF1A2Q05639 463 aaKnown RBP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 PPIDQ08752 370 aaKnown RBP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 LONRF2Q1L5Z9 754 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 TFDP3Q5H9I0 405 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF766Q5HY98 468 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 SIRPB2Q5JXA9 342 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 CDKAL1Q5VV42 579 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 FCRLBQ6BAA4 426 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 CEP128Q6ZU80 1094 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 NDUFAF7Q7L592 441 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 SLC25A41Q8N5S1 370 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 HM13Q8TCT9 377 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZNF398Q8TD17 642 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 FAF2Q96CS3 445 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 FRMD6Q96NE9 622 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 NPAS2Q99743 824 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 VKORC1Q9BQB6 163 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 CCM2Q9BSQ5 444 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 SLC25A51Q9H1U9 297 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 COG4Q9H9E3 785 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 KLHL1Q9NR64 748 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 DNAJB12Q9NXW2 375 aaKnown RBP8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 C3orf18Q9UK00 162 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 ADAM21Q9UKJ8 722 aa8.08□□□□□ -1.12
HMGB1P39-201ENST00000366304 HCFC1P51610 2035 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 NSG1A0A0A6YYJ2 146 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 LOC285095A0A1B0GVY8 99 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 ASPDHA6ND91 283 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 MAP2K7O14733 419 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 ASNA1O43681 348 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 CTAG2O75638 210 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 SNRNP200O75643 2136 aaKnown RBP8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 LY6G6DO95868 133 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 HOXD4P09016 255 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 ZGLP1P0C6A0 271 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 LORP23490 312 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 NSG1P42857 185 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 PRLHRP49683 370 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 CDKN1CP49918 316 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 MEOX1P50221 254 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 WNT3AP56704 352 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 TAS2R40P59535 323 aa8.07□□□□□ -1.12
HMGB1P39-201ENST00000366304 SNRPNP63162 240 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms