RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MRPS2Q9Y399 296 aaKnown RBP13.26□□□□□ -0.29
VPS29-201ENST00000360579 ITPR3Q14573 2671 aa13.26□□□□□ -0.29
VPS29-201ENST00000360579 CCDC88CQ9P219 2028 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 hCG_1818297A0A087WSY0 165 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 F8W8V4 182 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 H7C0C1 242 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 STK10O94804 968 aaKnown RBP13.25□□□□□ -0.29
VPS29-201ENST00000360579 UNC5CO95185 931 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 ZRANB2O95218 330 aaKnown RBP eCLIP13.25□□□□□ -0.291e-7■■■■□ 19.3
VPS29-201ENST00000360579 S1PR4O95977 384 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 RPN2P04844 631 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 SNRPB2P08579 225 aaKnown RBP13.25□□□□□ -0.29
VPS29-201ENST00000360579 TPBGLP0DKB5 382 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 CAPN3P20807 821 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 AGAP20933 346 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 RBL1P28749 1068 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 PEBP1P30086 187 aaKnown RBP13.25□□□□□ -0.29
VPS29-201ENST00000360579 ATP5OP48047 213 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 CDKN1CP49918 316 aaPredicted RBP13.25□□□□□ -0.29
VPS29-201ENST00000360579 OCA2Q04671 838 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 CACNG1Q06432 222 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 ITIH4Q14624 930 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 DNAJC21Q5F1R6 531 aaKnown RBP13.25□□□□□ -0.29
VPS29-201ENST00000360579 DNAJC1Q96KC8 554 aaKnown RBP13.25□□□□□ -0.29
VPS29-201ENST00000360579 TBL1YQ9BQ87 522 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 ARNT2Q9HBZ2 717 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 SMARCAL1Q9NZC9 954 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 SEC14L3Q9UDX4 400 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 PLAGL1Q9UM63 463 aa13.25□□□□□ -0.29
VPS29-201ENST00000360579 PKDREJQ9NTG1 2253 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 DOCK10Q96BY6 2186 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 NSG1A0A0A6YYJ2 146 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 FITM1A5D6W6 292 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 APOC4-APOC2K7ER74 178 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 CCL22O00626 93 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 SRPX2O60687 465 aaPredicted RBP13.24□□□□□ -0.29
VPS29-201ENST00000360579 FKBP9O95302 570 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 APOC2P02655 101 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 UQCRHP07919 91 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 PSMB4P28070 264 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 PKLRP30613 574 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 SOX11P35716 441 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 OR1D4P47884 311 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 SMSP52788 366 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 AP2B1P63010 937 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 KLC1Q07866 573 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 OLIG2Q13516 323 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 TCEAL1Q15170 157 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 DBN1Q16643 649 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 CCDC181Q5TID7 509 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 PRMT9Q6P2P2 845 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 PACS1Q6VY07 963 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 NDUFAF7Q7L592 441 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 CCDC50Q8IVM0 306 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 KATNAL2Q8IYT4 538 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 RCOR2Q8IZ40 523 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 SUN3Q8TAQ9 357 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.24□□□□□ -0.29
VPS29-201ENST00000360579 MIEF2Q96C03 454 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 ZNF285Q96NJ3 590 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 ALS2CR12Q96Q35 445 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 SELENOSQ9BQE4 189 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS29-201ENST00000360579 ZNF304Q9HCX3 659 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 NLE1Q9NVX2 485 aaPredicted RBP13.24□□□□□ -0.29
VPS29-201ENST00000360579 PTGFRNQ9P2B2 879 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 ZNF282Q9UDV7 671 aaPredicted RBP13.24□□□□□ -0.29
VPS29-201ENST00000360579 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS29-201ENST00000360579 HYOU1Q9Y4L1 999 aa13.24□□□□□ -0.29
VPS29-201ENST00000360579 SLC5A10A0PJK1 596 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 BHMG1C9JSJ3 638 aaPredicted RBP13.23□□□□□ -0.29
VPS29-201ENST00000360579 KCNN4O15554 427 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 RASAL1O95294 804 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 SERPINA7P05543 415 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 TPM3P06753 285 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 ZGLP1P0C6A0 271 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 OR56A5P0C7T3 313 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 PRR35P0CG20 571 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 CD9P21926 228 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 CXCR2P25025 360 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 BRD3Q15059 726 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 ANKRD20A2Q5SQ80 823 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 ANKRD20A1Q5TYW2 823 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 ANKRD20A3Q5VUR7 823 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 ATG9BQ674R7 924 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 DENND5AQ6IQ26 1287 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 MYO7BQ6PIF6 2116 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 CNSTQ6PJW8 725 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 SPNS3Q6ZMD2 512 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 RIPOR1Q6ZS17 1223 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 BBS12Q6ZW61 710 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 CDKL3Q8IVW4 592 aaPredicted RBP13.23□□□□□ -0.29
VPS29-201ENST00000360579 FAM20CQ8IXL6 584 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 PIANPQ8IYJ0 282 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 OR8K1Q8NGG5 319 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 STT3BQ8TCJ2 826 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 BRIX1Q8TDN6 353 aaKnown RBP13.23□□□□□ -0.29
VPS29-201ENST00000360579 ZUFSPQ96AP4 578 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 CDKN2AIPNLQ96HQ2 116 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 CCDC42Q96M95 316 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms